LOC_Os03g61750.1 (LOC_Os03g61750)

Aliases : LOC_Os03g61750

Description : tRNA adenosine-methyltransferase (TRM13)

Gene families : OG0006177 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006177_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g61750.1

Target	Alias	Description	ECC score	Gene Family Method
Aob_g11192	No alias	tRNA adenosine-methyltransferase *(TRM13) & original...	0.03	OrthoFinder output from all 47 species
Cba_g16808	No alias	tRNA adenosine-methyltransferase *(TRM13) & original...	0.02	OrthoFinder output from all 47 species
Dcu_g15857	No alias	tRNA adenosine-methyltransferase *(TRM13) & original...	0.04	OrthoFinder output from all 47 species
Lfl_g30723	No alias	tRNA adenosine-methyltransferase *(TRM13) & original...	0.03	OrthoFinder output from all 47 species
Nbi_g19725	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g16082	No alias	tRNA adenosine-methyltransferase *(TRM13) & original...	0.02	OrthoFinder output from all 47 species
Ppi_g44691	No alias	tRNA adenosine-methyltransferase *(TRM13) & original...	0.02	OrthoFinder output from all 47 species
Sam_g52586	No alias	tRNA adenosine-methyltransferase *(TRM13) & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006282	regulation of DNA repair	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0051052	regulation of DNA metabolic process	IEP	HCCA
BP	GO:0080134	regulation of response to stress	IEP	HCCA
BP	GO:0080135	regulation of cellular response to stress	IEP	HCCA
BP	GO:2001020	regulation of response to DNA damage stimulus	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007871	Methyltransferase_TRM13	181	247
IPR022776	TRM13/UPF0224_CHHC_Znf_dom	62	86
IPR021721	Znf_CCCH-type_TRM13	20	48

External Links

No external refs found!