Aliases : LOC_Os03g62400
Description : Pentatricopeptide repeat-containing protein At3g13880 OS=Arabidopsis thaliana (sp|q9lrv9|pp228_arath : 523.0)
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: LOC_Os03g62400.1 | |
| Cluster | HCCA: Cluster_98 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G09410 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.02 | OrthoFinder output from all 47 species | |
| AT4G37170 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| AT5G40410 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g069101 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g097113 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g06254 | PTAC9, OSB2 | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g07982 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g21708 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g21679 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g28133 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g34402 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g36021 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g36547 | OTP84 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g16270 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g18030 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g18410 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g18510 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g27203 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g30790 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g40533 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g05250 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g11891 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g14740 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g17095 | OTP84 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g27295 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g27910 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g36879 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g37339 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g37590 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g09092 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g16410 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g20429 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g28688 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g36477 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene08612.t1 | Aspi01Gene08612 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene58644.t1 | Aspi01Gene58644 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0045.g029993 | No alias | not classified & original description: CDS=1-1878 | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g02701 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g06508 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g06836 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g07194 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g67785 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g68679 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g76220 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.13G062400.1 | Ceric.13G062400 | not classified & original description: pacid=50636814... | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g23468 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g08424 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g30334 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g47882 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g15613 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01010898001 | No alias | Pentatricopeptide repeat-containing protein At2g34400... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01018922001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_39514 | No alias | Pentatricopeptide repeat-containing protein At3g03580... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os05g30710.1 | LOC_Os05g30710 | Pentatricopeptide repeat-containing protein At1g20230... | 0.02 | OrthoFinder output from all 47 species | |
| Len_g05402 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Len_g18263 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Len_g18274 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Len_g18306 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Len_g18585 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Len_g21510 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g40021 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g54484 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g07126 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_474261g0010 | No alias | Pentatricopeptide repeat-containing protein At3g12770... | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g04467 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g05630 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g13272 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g15863 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g19405 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g31349 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g34455 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g41092 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g41095 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g45895 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g38771 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g52106 | EMB2758 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g27694 | OTP84 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g30620 | OTP82 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g10348 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g18809 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g22095 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g47516 | OTP85 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g53950 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g57817 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g59234 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0016.g006956 | No alias | not classified & original description: CDS=1-2820 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0200.g025598 | No alias | not classified & original description: CDS=1-3840 | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g06304 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g28767 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g32958 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Smo399 | No alias | Pentatricopeptide repeat-containing protein At3g03580... | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g10878 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g17465 | REME1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g21192 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g25647 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g26504 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g35082 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g45439 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e001007_P001 | Zm00001e001007 | Putative pentatricopeptide repeat-containing protein... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e001038_P001 | CRR2, Zm00001e001038 | Pentatricopeptide repeat-containing protein At1g08070,... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e031660_P001 | Zm00001e031660 | Pentatricopeptide repeat-containing protein At4g14170... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e040920_P001 | Zm00001e040920 | Pentatricopeptide repeat-containing protein At3g26540... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 14 | 39 |
| IPR002885 | Pentatricopeptide_repeat | 42 | 71 |
| IPR002885 | Pentatricopeptide_repeat | 144 | 172 |
| IPR002885 | Pentatricopeptide_repeat | 353 | 377 |
| IPR002885 | Pentatricopeptide_repeat | 217 | 239 |
| IPR002885 | Pentatricopeptide_repeat | 115 | 141 |
| IPR002885 | Pentatricopeptide_repeat | 453 | 483 |
| IPR002885 | Pentatricopeptide_repeat | 243 | 295 |
| No external refs found! |
