LOC_Os03g64200.1 (LOC_Os03g64200)

Aliases : LOC_Os03g64200

Description : subfamily ABCG transporter

Gene families : OG0000139 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000139_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g64200.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00072p00119650	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
AT2G28070	No alias	ABC-2 type transporter family protein	0.05	OrthoFinder output from all 47 species
Ala_g21255	ATWBC11, ABCG11,...	subfamily ABCG transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g23188	ATWBC11, ABCG11,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g02591	ATWBC11, ABCG11,...	subfamily ABCG transporter & original description: none	0.07	OrthoFinder output from all 47 species
Als_g12763	ATWBC11, ABCG11,...	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g05283	ATWBC11, ABCG11,...	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene20191.t1	ATWBC11, ABCG11,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0012.g012801	ATWBC11, ABCG11,...	subfamily ABCG transporter & original description: CDS=1-2178	0.04	OrthoFinder output from all 47 species
Azfi_s0105.g044988	ATWBC11, ABCG11,...	subfamily ABCG transporter & original description: CDS=171-2360	0.04	OrthoFinder output from all 47 species
Cba_g30955	ATWBC11, ABCG11,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.05G037400.1	ATWBC11, ABCG11,...	not classified & original description: pacid=50577550...	0.05	OrthoFinder output from all 47 species
Ceric.1Z228500.1	ATWBC11, ABCG11,...	not classified & original description: pacid=50606281...	0.04	OrthoFinder output from all 47 species
Ceric.39G053900.1	ATWBC11, ABCG11,...	subfamily ABCG transporter & original description:...	0.02	OrthoFinder output from all 47 species
Dac_g09671	ATWBC11, ABCG11,...	subfamily ABCG transporter & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g13604	ATWBC11, ABCG11,...	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g23849	ATWBC11, ABCG11,...	subfamily ABCG transporter & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g42494	ATWBC11, ABCG11,...	subfamily ABCG transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g16383	ATWBC11, ABCG11,...	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
Gb_21283	ATWBC11, ABCG11,...	ABC transporter G family member 11 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Gb_33538	ATWBC11, ABCG11,...	ABC transporter G family member 11 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_10436774g0020	ATWBC11, ABCG11,...	ABC transporter G family member 11 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Msp_g14599	ATWBC11, ABCG11,...	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g29313	ATWBC11, ABCG11,...	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g17205	ATWBC11, ABCG11,...	subfamily ABCG transporter & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008755	ATWBC11, ABCG11,...	subfamily ABCG transporter & original description: CDS=1-2043	0.04	OrthoFinder output from all 47 species
Smo167920	ATWBC11, ABCG11,...	Solute transport.primary active transport.ABC...	0.05	OrthoFinder output from all 47 species
Smo93017	ATWBC11, ABCG11,...	Solute transport.primary active transport.ABC...	0.04	OrthoFinder output from all 47 species
Solyc11g069710.2.1	Solyc11g069710	subfamily ABCG transporter	0.03	OrthoFinder output from all 47 species
Spa_g45324	ATWBC11, ABCG11,...	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e006437_P002	Zm00001e006437	subfamily ABCG transporter	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
MF	GO:0043015	gamma-tubulin binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013525	ABC_2_trans	425	636
IPR003439	ABC_transporter-like_ATP-bd	126	266

External Links

No external refs found!

LOC_Os03g64200.1 (LOC_Os03g64200)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation