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  5. LOC_Os04g01490.1

LOC_Os04g01490.1 (LOC_Os04g01490)


Aliases : LOC_Os04g01490

Description : RING-v-class E3 ligase


Gene families : OG0000484 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000484_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g01490.1

Target Alias Description ECC score Gene Family Method Actions
AT5G59000 No alias RING/FYVE/PHD zinc finger superfamily protein 0.03 OrthoFinder output from all 47 species
Ala_g06591 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33633 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g23757 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g36279 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene07297.t1 Aspi01Gene07297 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0293.g063480 No alias E3 ubiquitin ligase & original description: CDS=497-1888 0.03 OrthoFinder output from all 47 species
Ceric.06G036800.1 Ceric.06G036800 not classified & original description: pacid=50620077... 0.02 OrthoFinder output from all 47 species
Ceric.15G009300.1 Ceric.15G009300 E3 ubiquitin ligase & original description:... 0.03 OrthoFinder output from all 47 species
Ehy_g10273 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01016394001 No alias No description available 0.05 OrthoFinder output from all 47 species
Len_g27849 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g05831 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g26464 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g14219 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g25036 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g48723 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g06087 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g08769 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29857 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g007680.4.1 Solyc09g007680 RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species
Solyc11g069350.2.1 Solyc11g069350 RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species
Spa_g55685 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g42112 No alias E3 ubiquiTin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e031805_P001 Zm00001e031805 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Zm00001e040499_P001 Zm00001e040499 RING-v-class E3 ligase 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 251 298
No external refs found!