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  5. LOC_Os04g01930.1

LOC_Os04g01930.1 (LOC_Os04g01930)


Aliases : LOC_Os04g01930

Description : xylogalacturonan xylosyltransferase


Gene families : OG0000367 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000367_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g01930.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00173420 evm_27.TU.AmTr_v1... Cell... 0.05 OrthoFinder output from all 47 species
Aev_g14078 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g28339 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g09743 No alias xylogalacturonan xylosyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47999 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01006274001 No alias Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01015329001 No alias Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01035880001 No alias Cell... 0.02 OrthoFinder output from all 47 species
LOC_Os06g07887.1 LOC_Os06g07887 Probable glycosyltransferase At5g25310 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Nbi_g25094 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g42061 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g25776 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g63757 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc07g045120.2.1 Solyc07g045120 xylogalacturonan xylosyltransferase 0.02 OrthoFinder output from all 47 species
Solyc12g008340.2.1 Solyc12g008340 Probable glycosyltransferase At5g03795 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc12g062940.3.1 Solyc12g062940 Probable glycosyltransferase At5g03795 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Tin_g03974 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0008037 cell recognition IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
InterPro domains Description Start Stop
IPR040911 Exostosin_GT47 101 391
No external refs found!