LOC_Os04g16822.1 (RPL22, LOC_Os04g16822)

Aliases : RPL22, LOC_Os04g16822

Description : component psRPL22 of large ribosomal subunit proteome

Gene families : OG0008579 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008579_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g16822.1
Cluster	HCCA: Cluster_121

Target	Alias	Description	ECC score	Gene Family Method
ATCG00810	RPL22	ribosomal protein L22	0.13	OrthoFinder output from all 47 species
Aev_g00527	RPL22	component *(uL22c) of large plastid ribosomal-subunit...	0.33	OrthoFinder output from all 47 species
Azfi_s0031.g024539	RPL22	not classified & original description: CDS=1-555	0.04	OrthoFinder output from all 47 species
Ceric.05G042500.1	RPL22, Ceric.05G042500	component *(uL22c) of large plastid ribosomal-subunit...	0.2	OrthoFinder output from all 47 species
Ceric.1Z020100.1	Ceric.1Z020100	component *(uL22c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ceric.29G004500.1	RPL22, Ceric.29G004500	component *(uL22c) of large plastid ribosomal-subunit...	0.21	OrthoFinder output from all 47 species
Ceric.38G009300.1	RPL22, Ceric.38G009300	component *(uL22c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Dcu_g13089	RPL22	component *(uL22c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Gb_19673	RPL22	component psRPL22 of large ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Lfl_g13571	RPL22	component *(uL22c) of large plastid ribosomal-subunit...	0.15	OrthoFinder output from all 47 species
Msp_g00391	RPL22	component *(uL22c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ore_g00408	RPL22	component *(uL22c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Smo137709	RPL22	Protein biosynthesis.organelle translation...	0.04	OrthoFinder output from all 47 species
Zm00001e042088_P001	RPL22, Zm00001e042088	50S ribosomal protein L22, chloroplastic OS=Zea mays...	0.06	OrthoFinder output from all 47 species
Zm00001e042144_P001	RPL22, Zm00001e042144	component psRPL22 of large ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001063	Ribosomal_L22	43	142

External Links

No external refs found!

LOC_Os04g16822.1 (RPL22, LOC_Os04g16822)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation