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  5. LOC_Os04g16842.1

LOC_Os04g16842.1 (RPOA, LOC_Os04g16842)


Aliases : RPOA, LOC_Os04g16842

Description : RpoA core component plastid-encoded RNA polymerase


Gene families : OG0006820 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006820_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g16842.1
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
ATCG00740 RPOA RNA polymerase subunit alpha 0.25 OrthoFinder output from all 47 species
Aev_g02093 RPOA core component *(RpoA) of plastid-encoded RNA polymerase... 0.4 OrthoFinder output from all 47 species
Als_g16097 RPOA core component *(RpoA) of plastid-encoded RNA polymerase... 0.1 OrthoFinder output from all 47 species
Aob_g19924 RPOA core component *(RpoA) of plastid-encoded RNA polymerase... 0.06 OrthoFinder output from all 47 species
Cba_g60899 RPOA core component *(RpoA) of plastid-encoded RNA polymerase... 0.07 OrthoFinder output from all 47 species
Ceric.05G041900.1 RPOA, Ceric.05G041900 core component *(RpoA) of plastid-encoded RNA polymerase... 0.3 OrthoFinder output from all 47 species
Ceric.05G046000.1 RPOA, Ceric.05G046000 not classified & original description: pacid=50577790... 0.03 OrthoFinder output from all 47 species
Ceric.1Z019700.1 RPOA, Ceric.1Z019700 not classified & original description: pacid=50586392... 0.25 OrthoFinder output from all 47 species
Ceric.38G008600.1 RPOA, Ceric.38G008600 core component *(RpoA) of plastid-encoded RNA polymerase... 0.31 OrthoFinder output from all 47 species
Dcu_g20888 RPOA core component *(RpoA) of plastid-encoded RNA polymerase... 0.1 OrthoFinder output from all 47 species
GSVIVT01024860001 RPOA DNA-directed RNA polymerase subunit alpha OS=Vitis vinifera 0.04 OrthoFinder output from all 47 species
Gb_17282 RPOA DNA-directed RNA polymerase subunit alpha OS=Cycas... 0.1 OrthoFinder output from all 47 species
Gb_25929 RPOA DNA-directed RNA polymerase subunit alpha OS=Cycas... 0.08 OrthoFinder output from all 47 species
Gb_36750 RPOA RpoA core component plastid-encoded RNA polymerase 0.08 OrthoFinder output from all 47 species
Lfl_g19118 RPOA core component *(RpoA) of plastid-encoded RNA polymerase... 0.27 OrthoFinder output from all 47 species
Mpzg00720.1 RPOA RpoA core component plastid-encoded RNA polymerase 0.1 OrthoFinder output from all 47 species
Nbi_g19365 RPOA core component *(RpoA) of plastid-encoded RNA polymerase... 0.08 OrthoFinder output from all 47 species
Pir_g12462 RPOA core component *(RpoA) of plastid-encoded RNA polymerase... 0.22 OrthoFinder output from all 47 species
Sam_g01699 No alias core component *(RpoA) of plastid-encoded RNA polymerase... 0.12 OrthoFinder output from all 47 species
Solyc00g500029.1.1 RPOA, Solyc00g500029 DNA-directed RNA polymerase subunit alpha OS=Solanum... 0.04 OrthoFinder output from all 47 species
Solyc00g500074.1.1 RPOA, Solyc00g500074 DNA-directed RNA polymerase subunit alpha OS=Solanum... 0.04 OrthoFinder output from all 47 species
Solyc00g500157.1.1 RPOA, Solyc00g500157 RpoA core component plastid-encoded RNA polymerase 0.33 OrthoFinder output from all 47 species
Solyc01g017440.1.1 RPOA, Solyc01g017440 DNA-directed RNA polymerase subunit alpha OS=Solanum... 0.38 OrthoFinder output from all 47 species
Solyc08g081560.1.1 RPOA, Solyc08g081560 DNA-directed RNA polymerase subunit alpha OS=Nicotiana... 0.03 OrthoFinder output from all 47 species
Solyc12g035890.3.1 RPOA, Solyc12g035890 DNA-directed RNA polymerase subunit alpha OS=Solanum... 0.06 OrthoFinder output from all 47 species
Spa_g18101 RPOA core component *(RpoA) of plastid-encoded RNA polymerase... 0.11 OrthoFinder output from all 47 species
Tin_g20913 RPOA core component *(RpoA) of plastid-encoded RNA polymerase... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR011260 RNAP_asu_C 265 325
IPR011262 DNA-dir_RNA_pol_insert 70 158
IPR011263 DNA-dir_RNA_pol_RpoA/D/Rpb3 36 225
No external refs found!