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  5. LOC_Os04g23550.1

LOC_Os04g23550.1 (LOC_Os04g23550)


Aliases : LOC_Os04g23550

Description : transcription factor (bHLH)


Gene families : OG0000267 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000267_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g23550.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00254380 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
AMTR_s00102p00056000 ATBHLH029,... Nutrient uptake.iron uptake.reduction-based strategy... 0.03 OrthoFinder output from all 47 species
AT2G28160 ATBHLH029,... FER-like regulator of iron uptake 0.02 OrthoFinder output from all 47 species
AT4G29930 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.06 OrthoFinder output from all 47 species
Adi_g024935 ATICE1, ICE1, SCRM bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g10904 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g31653 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g33297 ATBHLH029,... bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g09875 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g37060 No alias bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g11432 ATBHLH029,... bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g19713 ATBHLH029,... bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g36020 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68480 ATBHLH029,... bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene35383.t1 AMS, Aspi01Gene35383 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0003.g007559 SCRM2, ICE2 bHLH-type transcription factor & original description: CDS=1-894 0.05 OrthoFinder output from all 47 species
Azfi_s0005.g009209 ATBHLH029,... bHLH-type transcription factor & original description: CDS=1-1536 0.03 OrthoFinder output from all 47 species
Ceric.20G064100.1 Ceric.20G064100 bHLH-type transcription factor & original description:... 0.06 OrthoFinder output from all 47 species
Dac_g21599 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g42479 ATICE1, ICE1, SCRM bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g46087 ATBHLH029,... bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g13552 ATBHLH029,... bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g27756 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g31340 ATBHLH029,... bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18600 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01029311001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.05 OrthoFinder output from all 47 species
Gb_15579 SCRM2, ICE2 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Gb_26391 ATBHLH029,... transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Gb_36380 No alias transcription factor (bHLH) 0.1 OrthoFinder output from all 47 species
MA_10431811g0010 AMS transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
MA_110122g0010 AMS transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
MA_126263g0010 AMS transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
MA_196213g0010 SCRM2, ICE2 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
MA_28638g0010 No alias transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
MA_387150g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_4395g0010 AMS transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
MA_44439g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_666536g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_780853g0010 ATBHLH029,... transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
MA_89559g0010 AMS transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Ore_g43590 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0030.g010285 No alias bHLH-type transcription factor & original description: CDS=1-1623 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015846 No alias bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0077.g017655 No alias bHLH-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020579 No alias bHLH-type transcription factor & original description: CDS=1-1245 0.04 OrthoFinder output from all 47 species
Solyc05g014590.3.1 Solyc05g014590 transcription factor (bHLH) 0.1 OrthoFinder output from all 47 species
Solyc06g051550.4.1 ATBHLH029,... transcription factor (bHLH). iron uptake transcription factor FIT 0.04 OrthoFinder output from all 47 species
Solyc07g018010.3.1 Solyc07g018010 transcription factor (bHLH) 0.08 OrthoFinder output from all 47 species
Spa_g04989 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g09017 ATBHLH029,... bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g24450 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g29801 ATBHLH029,... bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10017 ATBHLH029,... bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e008393_P001 ATBHLH029,... transcription factor (bHLH). iron uptake transcription factor FIT 0.03 OrthoFinder output from all 47 species
Zm00001e008463_P008 Zm00001e008463 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e010525_P001 DYT1, Zm00001e010525 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
Zm00001e040186_P002 Zm00001e040186 transcription factor (bHLH) 0.17 OrthoFinder output from all 47 species
Zm00001e040675_P003 Zm00001e040675 transcription factor (bHLH) 0.2 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 94 139
No external refs found!