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  5. LOC_Os04g38680.1

LOC_Os04g38680.1 (LOC_Os04g38680)


Aliases : LOC_Os04g38680

Description : solute transporter (AAAP)


Gene families : OG0000278 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000278_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g38680.1
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00061580 evm_27.TU.AmTr_v1... Solute transport.carrier-mediated transport.APC... 0.05 OrthoFinder output from all 47 species
AMTR_s00009p00256180 evm_27.TU.AmTr_v1... Solute transport.carrier-mediated transport.APC... 0.04 OrthoFinder output from all 47 species
AMTR_s00010p00251660 evm_27.TU.AmTr_v1... Solute transport.carrier-mediated transport.APC... 0.03 OrthoFinder output from all 47 species
AMTR_s00010p00251810 evm_27.TU.AmTr_v1... Solute transport.carrier-mediated transport.APC... 0.02 OrthoFinder output from all 47 species
AT2G41190 No alias Transmembrane amino acid transporter family protein 0.05 OrthoFinder output from all 47 species
AT3G09330 No alias Transmembrane amino acid transporter family protein 0.04 OrthoFinder output from all 47 species
AT5G02180 No alias Transmembrane amino acid transporter family protein 0.01 OrthoFinder output from all 47 species
Adi_g017266 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g109983 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g37047 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g18469 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g47786 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g03383 No alias solute transporter *(AAAP) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g08352 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08482 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g18778 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g31436 No alias solute transporter *(AAAP) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene46053.t1 Aspi01Gene46053 solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g30124 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G055400.1 Ceric.04G055400 not classified & original description: pacid=50630661... 0.03 OrthoFinder output from all 47 species
Ceric.31G038800.1 Ceric.31G038800 solute transporter *(AAAP) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.38G016600.1 Ceric.38G016600 solute transporter *(AAAP) & original description:... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000430.16 No alias Solute transport.carrier-mediated transport.APC... 0.02 OrthoFinder output from all 47 species
Dac_g09939 No alias solute transporter *(AAAP) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g15316 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g18151 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g03378 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g11697 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02457 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04820 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17279 No alias solute transporter *(AAAP) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g28882 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01011399001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01019976001 No alias Solute transport.carrier-mediated transport.APC... 0.04 OrthoFinder output from all 47 species
GSVIVT01020259001 No alias Solute transport.carrier-mediated transport.APC... 0.02 OrthoFinder output from all 47 species
GSVIVT01033627001 No alias Solute transport.carrier-mediated transport.APC... 0.02 OrthoFinder output from all 47 species
GSVIVT01034218001 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01037496001 No alias Solute transport.carrier-mediated transport.APC... 0.02 OrthoFinder output from all 47 species
Gb_00870 No alias Amino acid transporter AVT1H OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Gb_27840 No alias solute transporter (AAAP) 0.03 OrthoFinder output from all 47 species
LOC_Os11g19240.1 LOC_Os11g19240 solute transporter (AAAP) 0.03 OrthoFinder output from all 47 species
Len_g15286 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g48117 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10430942g0030 No alias Amino acid transporter AVT1C OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_131191g0010 No alias solute transporter (AAAP) 0.03 OrthoFinder output from all 47 species
MA_33207g0010 No alias solute transporter (AAAP) 0.03 OrthoFinder output from all 47 species
MA_60453g0010 No alias solute transporter (AAAP) 0.02 OrthoFinder output from all 47 species
MA_670490g0010 No alias Amino acid transporter AVT1C OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g14582 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g20398 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06244 No alias solute transporter *(AAAP) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g13243 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g19402 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43892 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g32348 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g09068 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g013160.4.1 Solyc03g013160 solute transporter (AAAP) 0.03 OrthoFinder output from all 47 species
Solyc03g013440.4.1 Solyc03g013440 solute transporter (AAAP) 0.04 OrthoFinder output from all 47 species
Solyc03g063050.1.1 Solyc03g063050 Amino acid transporter AVT1C OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc06g061270.2.1 Solyc06g061270 solute transporter (AAAP) 0.03 OrthoFinder output from all 47 species
Solyc09g098380.3.1 Solyc09g098380 solute transporter (AAAP) 0.05 OrthoFinder output from all 47 species
Solyc11g008440.3.1 Solyc11g008440 solute transporter (AAAP) 0.01 OrthoFinder output from all 47 species
Spa_g11824 No alias solute transporter *(AAAP) & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g21494 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07839 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e039154_P004 Zm00001e039154 solute transporter (AAAP) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0004605 phosphatidate cytidylyltransferase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006655 phosphatidylglycerol biosynthetic process IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032048 cardiolipin metabolic process IEP HCCA
BP GO:0032049 cardiolipin biosynthetic process IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
BP GO:0045017 glycerolipid biosynthetic process IEP HCCA
BP GO:0046471 phosphatidylglycerol metabolic process IEP HCCA
BP GO:0046474 glycerophospholipid biosynthetic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
MF GO:0070567 cytidylyltransferase activity IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR013057 AA_transpt_TM 68 446
No external refs found!