LOC_Os04g38750.1 (LOC_Os04g38750)

Aliases : LOC_Os04g38750

Description : component psPSRP3 of small ribosomal subunit proteome

Gene families : OG0003343 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003343_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g38750.1
Cluster	HCCA: Cluster_59

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00055110	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.09	OrthoFinder output from all 47 species
AT1G68590	No alias	Ribosomal protein PSRP-3/Ycf65	0.25	OrthoFinder output from all 47 species
Adi_g023800	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Adi_g086977	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ala_g00515	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Als_g02788	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Als_g28969	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Aob_g07615	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Aob_g08130	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aop_g00272	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Aspi01Gene40608.t1	Aspi01Gene40608	component *(cS23) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Azfi_s0052.g031601	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Azfi_s0405.g068388	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Cba_g32123	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.29G082200.1	Ceric.29G082200	component *(cS23) of small plastid ribosomal-subunit...	0.22	OrthoFinder output from all 47 species
Cre02.g083950	No alias	Protein biosynthesis.organelle translation...	0.11	OrthoFinder output from all 47 species
Dac_g02540	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Dcu_g00469	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Dcu_g05305	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Ehy_g06384	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
GSVIVT01031053001	No alias	Protein biosynthesis.organelle translation...	0.2	OrthoFinder output from all 47 species
Gb_30016	No alias	component psPSRP3 of small ribosomal subunit proteome	0.15	OrthoFinder output from all 47 species
Len_g12700	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Lfl_g02667	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
MA_10432955g0010	No alias	component psPSRP3 of small ribosomal subunit proteome	0.11	OrthoFinder output from all 47 species
MA_19834g0010	No alias	component psPSRP3 of small ribosomal subunit proteome	0.08	OrthoFinder output from all 47 species
Mp2g13520.1	No alias	component psPSRP3 of small ribosomal subunit proteome	0.23	OrthoFinder output from all 47 species
Nbi_g11062	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Ore_g05910	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Ore_g26894	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Pir_g18227	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Pir_g43396	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Pnu_g09092	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Pp3c6_19070V3.1	Pp3c6_19070	Ribosomal protein PSRP-3/Ycf65	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0075.g017327	No alias	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.07	OrthoFinder output from all 47 species
Sam_g23730	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Solyc03g034190.3.1	Solyc03g034190	component psPSRP3 of small ribosomal subunit proteome	0.08	OrthoFinder output from all 47 species
Solyc05g009570.3.1	Solyc05g009570	component psPSRP3 of small ribosomal subunit proteome	0.16	OrthoFinder output from all 47 species
Spa_g01460	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Tin_g11701	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Tin_g12630	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Zm00001e041019_P001	Zm00001e041019	component psPSRP3 of small ribosomal subunit proteome	0.32	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0005381	iron ion transmembrane transporter activity	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
BP	GO:0006450	regulation of translational fidelity	IEP	HCCA
BP	GO:0006826	iron ion transport	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0010207	photosystem II assembly	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0034755	iron ion transmembrane transport	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
MF	GO:0051920	peroxiredoxin activity	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0065008	regulation of biological quality	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006924	Ribosomal_PSRP3/Ycf65	130	176

External Links

No external refs found!

LOC_Os04g38750.1 (LOC_Os04g38750)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation