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  5. LOC_Os04g42570.1

LOC_Os04g42570.1 (PLT1, LOC_Os04g42570)


Aliases : PLT1, LOC_Os04g42570

Description : transcription factor (AP2)


Gene families : OG0000110 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000110_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g42570.1
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00086450 ADAP,... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
AMTR_s00019p00225230 AIL5, EMK, CHO1,... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
AMTR_s00066p00028460 BBM,... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.09 OrthoFinder output from all 47 species
AT1G51190 PLT2 Integrase-type DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G28550 RAP2.7, TOE1 related to AP2.7 0.03 OrthoFinder output from all 47 species
AT3G20840 PLT1 Integrase-type DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G54320 WRI1, ATWRI1, ASML1, WRI Integrase-type DNA-binding superfamily protein 0.06 OrthoFinder output from all 47 species
AT5G17430 BBM Integrase-type DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G57390 AIL5, EMK, CHO1 AINTEGUMENTA-like 5 0.03 OrthoFinder output from all 47 species
Adi_g060113 BBM AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Adi_g084121 BBM AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Als_g14197 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Als_g15824 AP2, FLO2, FL1 AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Aop_g40928 PLT2 AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene03089.t1 WRI1, ATWRI1,... AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene24152.t1 PLT2, Aspi01Gene24152 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene38022.t1 Aspi01Gene38022 AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene38120.t1 PLT2, Aspi01Gene38120 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene67586.t1 AP2, FLO2, FL1,... AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Cba_g11379 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Ceric.03G054600.1 ADAP, Ceric.03G054600 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Ceric.10G056100.1 PLT2, Ceric.10G056100 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Ceric.10G056200.1 PLT2, Ceric.10G056200 AP2-type transcription factor *(WRI/AIL) & original... 0.09 OrthoFinder output from all 47 species
Ceric.12G002600.1 Ceric.12G002600 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Ceric.1Z150100.1 AP2, FLO2, FL1,... AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Ceric.26G003300.1 PLT2, Ceric.26G003300 AP2-type transcription factor *(WRI/AIL) & original... 0.08 OrthoFinder output from all 47 species
Ceric.32G008600.1 BBM, Ceric.32G008600 AP2-type transcription factor *(WRI/AIL) & original... 0.04 OrthoFinder output from all 47 species
Dac_g07392 PLT2 AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Dac_g09110 BBM AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g10361 AP2, FLO2, FL1 AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g33754 PLT2 AP2-type transcription factor *(WRI/AIL) & original... 0.07 OrthoFinder output from all 47 species
Dcu_g41387 PLT2 AP2-type transcription factor *(WRI/AIL) & original... 0.05 OrthoFinder output from all 47 species
Ehy_g22125 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g30529 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01002536001 PLT3, AIL6 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.04 OrthoFinder output from all 47 species
GSVIVT01016352001 RAP2.7, TOE1 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
GSVIVT01022081001 AP2, FLO2, FL1 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
GSVIVT01023697001 ADAP RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
GSVIVT01027345001 WRI1, ATWRI1, ASML1, WRI RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
Gb_33988 AP2, FLO2, FL1 transcription factor (AP2) 0.02 OrthoFinder output from all 47 species
LOC_Os07g39110.2 LOC_Os07g39110 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g46832 ADAP AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g17116 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g29068 PLT2 AP2-type transcription factor *(WRI/AIL) & original... 0.04 OrthoFinder output from all 47 species
MA_10005612g0010 ADAP no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_113625g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_196219g0010 AIL5, EMK, CHO1 transcription factor (AP2) 0.04 OrthoFinder output from all 47 species
MA_30905g0010 WRI1, ATWRI1, ASML1, WRI transcription factor (AP2) 0.02 OrthoFinder output from all 47 species
MA_8090186g0010 AP2, FLO2, FL1 transcription factor (AP2) 0.03 OrthoFinder output from all 47 species
MA_86195g0010 PLT2 transcription factor (AP2) 0.05 OrthoFinder output from all 47 species
MA_95471g0010 No alias transcription factor (AP2) 0.03 OrthoFinder output from all 47 species
Msp_g18324 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g28024 BBM AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Msp_g31091 PLT2 AP2-type transcription factor *(WRI/AIL) & original... 0.04 OrthoFinder output from all 47 species
Msp_g35360 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Msp_g39406 No alias RAM1-dependent transcription factor *(WRI5) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g25934 PLT2 AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g29022 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Nbi_g35194 AP2, FLO2, FL1 AP2-type transcription factor *(WRI/AIL) & original... 0.04 OrthoFinder output from all 47 species
Nbi_g44270 WRI1, ATWRI1, ASML1, WRI RAM1-dependent transcription factor *(WRI5) & original... 0.03 OrthoFinder output from all 47 species
Ore_g27835 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Ore_g41099 WRI1, ATWRI1, ASML1, WRI AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g21617 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g25537 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Pnu_g28202 WRI1, ATWRI1, ASML1, WRI AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Pp3c22_17870V3.1 Pp3c22_17870 target of early activation tagged (EAT) 2 0.01 OrthoFinder output from all 47 species
Ppi_g40008 BBM AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g45371 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Sam_g13728 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Sam_g49724 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Solyc11g008560.2.1 BBM, Solyc11g008560 transcription factor (AP2) 0.1 OrthoFinder output from all 47 species
Solyc11g061750.2.1 PLT2, Solyc11g061750 transcription factor (AP2) 0.1 OrthoFinder output from all 47 species
Spa_g28499 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g38474 PLT2 AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Spa_g50963 AP2, FLO2, FL1 AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Spa_g51078 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e015104_P001 PLT2, Zm00001e015104 transcription factor (AP2) 0.29 OrthoFinder output from all 47 species
Zm00001e018951_P001 PLT2, Zm00001e018951 transcription factor (AP2) 0.23 OrthoFinder output from all 47 species
Zm00001e034197_P002 ADAP, Zm00001e034197 transcription factor (AP2) 0.02 OrthoFinder output from all 47 species
Zm00001e037696_P002 PLT2, Zm00001e037696 transcription factor (AP2) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004866 endopeptidase inhibitor activity IEP HCCA
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP HCCA
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP HCCA
MF GO:0008417 fucosyltransferase activity IEP HCCA
MF GO:0008519 ammonium transmembrane transporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0030414 peptidase inhibitor activity IEP HCCA
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP HCCA
BP GO:0042546 cell wall biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0061134 peptidase regulator activity IEP HCCA
MF GO:0061135 endopeptidase regulator activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 380 431
IPR001471 AP2/ERF_dom 279 337
No external refs found!