1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os04g43910.1

LOC_Os04g43910.1 (ARF10, LOC_Os04g43910)


Aliases : ARF10, LOC_Os04g43910

Description : transcription factor (ARF)


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g43910.1
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00267580 ARF19, IAA22,... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
AMTR_s00148p00046020 ARF16,... RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
AT1G19850 MP, IAA24, ARF5 Transcriptional factor B3 family protein /... 0.04 OrthoFinder output from all 47 species
AT2G33860 ARF3, ETT Transcriptional factor B3 family protein /... 0.04 OrthoFinder output from all 47 species
AT5G37020 ARF8, ATARF8 auxin response factor 8 0.05 OrthoFinder output from all 47 species
Adi_g011925 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g020207 ARF9 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g103241 TIR5, MSG1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g41559 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene61150.t1 ARF16, Aspi01Gene61150 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0007.g010950 ARF11 not classified & original description: CDS=1-855 0.04 OrthoFinder output from all 47 species
Azfi_s0013.g013413 ARF10 ARF-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Azfi_s0038.g026103 ARF6 ARF-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Azfi_s0065.g035933 ARF6 not classified & original description: CDS=1-678 0.06 OrthoFinder output from all 47 species
Azfi_s0129.g048848 ARF6 ARF-type transcription factor & original description: CDS=56-2815 0.02 OrthoFinder output from all 47 species
Azfi_s0384.g067487 ARF8, ATARF8 ARF-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Azfi_s0433.g069577 ARF6 ARF-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.03G061000.1 HSS, ARF1-BP,... ARF-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.20G087500.1 ARF1, Ceric.20G087500 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.21G089900.1 HSS, ARF1-BP,... ARF-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.29G070000.1 ARF6, Ceric.29G070000 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g03840 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g07132 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.09 OrthoFinder output from all 47 species
Dac_g44007 ARF16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07020 ARF10 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g11966 ARF10 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18587 ARF16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26859 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g27083 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g27139 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g27900 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g30682 ARF10 ARF-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01011008001 HSS, ARF1-BP, ARF2, ORE14 RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
GSVIVT01032251001 ARF19, IAA22, ARF11 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
Gb_39786 ARF16 transcription factor (ARF) 0.05 OrthoFinder output from all 47 species
Len_g17368 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g14944 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14175 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g16463 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30357 ARF16 ARF-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g40947 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g08351 ARF16 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g29453 ARF1 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g41869 ARF17 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g06724 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g008995 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012712 ARF6 ARF-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Solyc02g037530.3.1 ARF8, ATARF8,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Solyc05g056040.3.1 ARF11, Solyc05g056040 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Solyc07g042260.4.1 ARF19, IAA22,... transcription factor (ARF) 0.05 OrthoFinder output from all 47 species
Solyc08g008380.4.1 ARF9, Solyc08g008380 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Solyc08g082630.3.1 ARF9, Solyc08g082630 transcription factor (ARF) 0.05 OrthoFinder output from all 47 species
Spa_g39677 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55449 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g04653 ARF16 ARF-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e012670_P001 ARF16, Zm00001e012670 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e013061_P001 ARF16, Zm00001e013061 transcription factor (ARF) 0.05 OrthoFinder output from all 47 species
Zm00001e015164_P002 ARF10, Zm00001e015164 transcription factor (ARF) 0.06 OrthoFinder output from all 47 species
Zm00001e016366_P002 ARF11, Zm00001e016366 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e023038_P001 ARF10, Zm00001e023038 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Zm00001e032423_P002 ARF3, ETT, Zm00001e032423 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
InterPro domains Description Start Stop
IPR010525 ARF_dom 276 359
IPR003340 B3_DNA-bd 121 222
No external refs found!