Aliases : LOC_Os04g46310
Description : SSU processome assembly factor (UTP10)
Gene families : OG0003994 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003994_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00111p00089410 | evm_27.TU.AmTr_v1... | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.05 | OrthoFinder output from all 47 species | |
| AT3G06530 | No alias | ARM repeat superfamily protein | 0.21 | OrthoFinder output from all 47 species | |
| Adi_g117341 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g19835 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g39223 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0335.g065507 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g23591 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.35G057300.1 | Ceric.35G057300 | SSU processome assembly factor *(UTP10) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Cre12.g548000 | No alias | Uncharacterized protein At3g06530 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g07784 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Dde_g10509 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g26136 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01013976001 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.13 | OrthoFinder output from all 47 species | |
| Gb_31968 | No alias | Uncharacterized protein At3g06530 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_31975 | No alias | SSU processome assembly factor (UTP10) | 0.03 | OrthoFinder output from all 47 species | |
| Len_g13951 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g18330 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.02 | OrthoFinder output from all 47 species | |
| MA_735g0010 | No alias | Uncharacterized protein At3g06530 OS=Arabidopsis... | 0.06 | OrthoFinder output from all 47 species | |
| Mp1g06160.1 | No alias | SSU processome assembly factor (UTP10) | 0.07 | OrthoFinder output from all 47 species | |
| Ppi_g32298 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g04467 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g27886 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Sam_g40580 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.08 | OrthoFinder output from all 47 species | |
| Sam_g45556 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Smo438493 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.07 | OrthoFinder output from all 47 species | |
| Solyc03g093480.3.1 | Solyc03g093480 | SSU processome assembly factor (UTP10) | 0.21 | OrthoFinder output from all 47 species | |
| Spa_g26502 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g20111 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e016831_P001 | Zm00001e016831 | SSU processome assembly factor (UTP10) | 0.19 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0002097 | tRNA wobble base modification | IEP | HCCA |
| BP | GO:0002098 | tRNA wobble uridine modification | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005643 | nuclear pore | IEP | HCCA |
| CC | GO:0005730 | nucleolus | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0006400 | tRNA modification | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0008033 | tRNA processing | IEP | HCCA |
| MF | GO:0008080 | N-acetyltransferase activity | IEP | HCCA |
| MF | GO:0008134 | transcription factor binding | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| MF | GO:0016407 | acetyltransferase activity | IEP | HCCA |
| MF | GO:0016410 | N-acyltransferase activity | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| CC | GO:0030684 | preribosome | IEP | HCCA |
| CC | GO:0032040 | small-subunit processome | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| CC | GO:0033588 | elongator holoenzyme complex | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| CC | GO:0140535 | intracellular protein-containing complex | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| No external refs found! |
