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  5. LOC_Os04g52000.1

LOC_Os04g52000.1 (LOC_Os04g52000)


Aliases : LOC_Os04g52000

Description : clade F phosphatase


Gene families : OG0000578 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000578_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g52000.1
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
AT1G78200 No alias Protein phosphatase 2C family protein 0.02 OrthoFinder output from all 47 species
Adi_g054858 No alias clade F phosphatase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g04850 No alias clade F phosphatase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g36138 No alias clade F phosphatase & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g40394 No alias clade F phosphatase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0019.g015125 No alias clade F phosphatase & original description: CDS=264-1103 0.03 OrthoFinder output from all 47 species
Azfi_s0077.g038059 No alias clade F phosphatase & original description: CDS=163-1041 0.02 OrthoFinder output from all 47 species
Ceric.07G076700.1 Ceric.07G076700 clade F phosphatase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.09G057700.1 PIA1, Ceric.09G057700 clade F phosphatase & original description:... 0.02 OrthoFinder output from all 47 species
Len_g08442 No alias clade F phosphatase & original description: none 0.02 OrthoFinder output from all 47 species
Mp5g14150.1 No alias clade F phosphatase 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004848 No alias clade F phosphatase & original description: CDS=128-1219 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011718 No alias clade F phosphatase & original description: CDS=155-994 0.03 OrthoFinder output from all 47 species
Solyc01g105280.3.1 Solyc01g105280 clade F phosphatase 0.03 OrthoFinder output from all 47 species
Solyc10g047290.2.1 Solyc10g047290 clade F phosphatase 0.03 OrthoFinder output from all 47 species
Tin_g04998 PIA1 clade F phosphatase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g14678 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e035067_P001 Zm00001e035067 clade F phosphatase 0.03 OrthoFinder output from all 47 species
Zm00001e040034_P002 Zm00001e040034 clade F phosphatase 0.03 OrthoFinder output from all 47 species
Zm00001e041615_P001 Zm00001e041615 clade F phosphatase 0.06 OrthoFinder output from all 47 species
Zm00001e041710_P002 Zm00001e041710 clade F phosphatase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001932 PPM-type_phosphatase-like_dom 82 312
No external refs found!