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  5. LOC_Os04g52240.1

LOC_Os04g52240.1 (KS, KS1, ATKS1, ATKS,...)


Aliases : KS, KS1, ATKS1, ATKS, GA2, LOC_Os04g52240

Description : mono-/sesquiterpene-/diterpene synthase


Gene families : OG0000661 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000661_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g52240.1
Cluster HCCA: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
Aop_g64876 CPS, ATCPS1,... EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g60786 CPS, ATCPS1,... EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08902 CPS, ATCPS1,... EC_5.5 intramolecular lyase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g10734 KS, KS1, ATKS1, ATKS, GA2 EC_5.5 intramolecular lyase & original description: none 0.03 OrthoFinder output from all 47 species
Gb_07328 CPS, ATCPS1,... Alpha-bisabolene synthase OS=Abies grandis... 0.03 OrthoFinder output from all 47 species
LOC_Os11g28490.1 LOC_Os11g28490 Stemod-13(17)-ene synthase OS=Oryza sativa subsp. indica... 0.04 OrthoFinder output from all 47 species
Pp3c21_15690V3.1 Pp3c21_15690 No annotation 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA Interproscan
MF GO:0010333 terpene synthase activity IEA Interproscan
MF GO:0016829 lyase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001906 Terpene_synth_N 154 322
IPR005630 Terpene_synthase_metal-bd 363 508
No external refs found!