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  5. LOC_Os04g52260.1

LOC_Os04g52260.1 (LOC_Os04g52260)


Aliases : LOC_Os04g52260

Description : no hits & (original description: none)


Gene families : OG0000520 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000520_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g52260.1
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AMTR_s01045p00008470 evm_27.TU.AmTr_v1... 14 kDa proline-rich protein DC2.15 OS=Daucus carota 0.03 OrthoFinder output from all 47 species
AT1G12090 ELP extensin-like protein 0.06 OrthoFinder output from all 47 species
AT1G62510 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.07 OrthoFinder output from all 47 species
AT2G10940 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.05 OrthoFinder output from all 47 species
AT3G22120 CWLP cell wall-plasma membrane linker protein 0.04 OrthoFinder output from all 47 species
AT4G12510 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.03 OrthoFinder output from all 47 species
AT4G12520 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.03 OrthoFinder output from all 47 species
AT4G15160 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.03 OrthoFinder output from all 47 species
AT5G46890 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.03 OrthoFinder output from all 47 species
AT5G46900 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.03 OrthoFinder output from all 47 species
Aev_g09699 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05424 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g46787 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g12299 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene09628.t1 Aspi01Gene09628 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18981.t1 Aspi01Gene18981 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18982.t1 Aspi01Gene18982 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18983.t1 Aspi01Gene18983 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18988.t1 Aspi01Gene18988 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g03590 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.22G081100.1 Ceric.22G081100 not classified & original description: pacid=50615395... 0.03 OrthoFinder output from all 47 species
Ceric.27G038200.1 AIR1, Ceric.27G038200 not classified & original description: pacid=50605040... 0.04 OrthoFinder output from all 47 species
Ceric.27G038400.1 AIR1, Ceric.27G038400 not classified & original description: pacid=50605494... 0.04 OrthoFinder output from all 47 species
Ceric.27G038500.1 AIR1, Ceric.27G038500 not classified & original description: pacid=50605347... 0.04 OrthoFinder output from all 47 species
Dcu_g00795 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g15378 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g36538 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g41635 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g08778 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g14948 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g31926 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01001299001 No alias 14 kDa proline-rich protein DC2.15 OS=Daucus carota 0.04 OrthoFinder output from all 47 species
Gb_33165 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os02g44310.1 ELP, LOC_Os02g44310 14 kDa proline-rich protein DC2.15 OS=Daucus carota... 0.04 OrthoFinder output from all 47 species
MA_370739g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_591608g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g04674 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g11856 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g21228 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g63004 AIR1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g083996.1.1 Solyc03g083996 14 kDa proline-rich protein DC2.15 OS=Daucus carota... 0.03 OrthoFinder output from all 47 species
Solyc08g005960.2.1 Solyc08g005960 Lipid transfer protein EARLI 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc08g074480.1.1 Solyc08g074480 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc08g078920.2.1 Solyc08g078920 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc08g078930.1.1 Solyc08g078930 pEARLI1-like lipid transfer protein 2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g51578 AIR1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e002302_P001 Zm00001e002302 14 kDa proline-rich protein DC2.15 OS=Daucus carota... 0.04 OrthoFinder output from all 47 species
Zm00001e006965_P001 Zm00001e006965 36.4 kDa proline-rich protein OS=Solanum lycopersicum... 0.04 OrthoFinder output from all 47 species
Zm00001e037901_P001 Zm00001e037901 Cortical cell-delineating protein OS=Zea mays... 0.02 OrthoFinder output from all 47 species
Zm00001e037906_P001 Zm00001e037906 Cortical cell-delineating protein OS=Zea mays... 0.02 OrthoFinder output from all 47 species
Zm00001e041513_P001 Zm00001e041513 14 kDa proline-rich protein DC2.15 OS=Daucus carota... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
InterPro domains Description Start Stop
IPR027923 Hydrophob_seed_dom 69 153
No external refs found!