1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os04g52310.1

LOC_Os04g52310.1 (ZIP1, LOC_Os04g52310)


Aliases : ZIP1, LOC_Os04g52310

Description : metal cation transporter (ZIP)


Gene families : OG0000472 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000472_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g52310.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00062p00183460 ZIP1,... Solute transport.carrier-mediated transport.ZIP... 0.03 OrthoFinder output from all 47 species
AMTR_s00062p00183790 ZIP1,... Solute transport.carrier-mediated transport.ZIP... 0.02 OrthoFinder output from all 47 species
AT3G12750 ZIP1 zinc transporter 1 precursor 0.03 OrthoFinder output from all 47 species
Aspi01Gene27419.t1 ATZIP4, ZIP4,... metal cation transporter *(ZIP) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0694.g082561 ATZIP4, ZIP4 metal cation transporter *(ZIP) & original description:... 0.02 OrthoFinder output from all 47 species
Azfi_s0974.g094129 ATZIP4, ZIP4 metal cation transporter *(ZIP) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.14G032200.1 ATZIP4, ZIP4,... metal cation transporter *(ZIP) & original description:... 0.03 OrthoFinder output from all 47 species
Len_g36026 ATZIP4, ZIP4 metal cation transporter *(ZIP) & original description: none 0.03 OrthoFinder output from all 47 species
MA_6126514g0010 ZIP1 metal cation transporter (ZIP) 0.02 OrthoFinder output from all 47 species
Pir_g29455 ATZIP4, ZIP4 metal cation transporter *(ZIP) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g17347 ZIP7 metal cation transporter *(ZIP) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004135 ATZIP4, ZIP4 metal cation transporter *(ZIP) & original description:... 0.02 OrthoFinder output from all 47 species
Sam_g17001 No alias metal cation transporter *(ZIP) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g069190.4.1 ZIP10, Solyc02g069190 metal cation transporter (ZIP) 0.02 OrthoFinder output from all 47 species
Solyc02g069200.3.1 ATIRT1, IRT1,... metal cation transporter (ZIP) 0.02 OrthoFinder output from all 47 species
Solyc02g069210.3.1 ZIP10, Solyc02g069210 metal cation transporter (ZIP) 0.02 OrthoFinder output from all 47 species
Solyc05g053370.3.1 ATZIP6, ZIP6,... metal cation transporter (ZIP) 0.05 OrthoFinder output from all 47 species
Solyc07g043230.3.1 ZIP3, Solyc07g043230 metal cation transporter (ZIP) 0.02 OrthoFinder output from all 47 species
Solyc08g065190.3.1 ATZIP4, ZIP4,... metal cation transporter (ZIP) 0.04 OrthoFinder output from all 47 species
Zm00001e006961_P001 ZIP1, Zm00001e006961 metal cation transporter (ZIP) 0.04 OrthoFinder output from all 47 species
Zm00001e033157_P001 ZIP5, Zm00001e033157 metal cation transporter (ZIP) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
BP GO:0030001 metal ion transport IEA Interproscan
MF GO:0046873 metal ion transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016843 amine-lyase activity IEP HCCA
MF GO:0016844 strictosidine synthase activity IEP HCCA
InterPro domains Description Start Stop
IPR003689 ZIP 42 361
No external refs found!