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  5. LOC_Os04g54870.1

LOC_Os04g54870.1 (LOC_Os04g54870)


Aliases : LOC_Os04g54870

Description : Binding partner of ACD11 1 OS=Arabidopsis thaliana (sp|q9lfd5|bpa1_arath : 111.0)


Gene families : OG0000642 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000642_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g54870.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g115931 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g16560 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14819 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22163 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g11474 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19115 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g21309 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g45255 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g37925 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene57383.t1 Aspi01Gene57383 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0130.g049026 No alias not classified & original description: CDS=251-1009 0.03 OrthoFinder output from all 47 species
Ceric.25G062800.1 Ceric.25G062800 not classified & original description: pacid=50593278... 0.03 OrthoFinder output from all 47 species
Dac_g13809 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g07449 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g23747 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g02086 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04385 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g04417 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g11503 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g19786 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19804 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
GSVIVT01011624001 No alias Binding partner of ACD11 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Lfl_g04564 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_26630g0010 No alias Binding partner of ACD11 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp3g08610.1 No alias Binding partner of ACD11 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Nbi_g03642 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g11240 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g03026 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g00654 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0045.g013208 No alias not classified & original description: CDS=23-751 0.04 OrthoFinder output from all 47 species
Sam_g07450 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g07486 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g11660 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g04495 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g38160 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g05834 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e005469_P003 Zm00001e005469 Binding partner of ACD11 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e036683_P001 Zm00001e036683 Binding partner of ACD11 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005096 GTPase activator activity IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 15 73
No external refs found!