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  5. LOC_Os04g56170.1

LOC_Os04g56170.1 (SPL8, LOC_Os04g56170)


Aliases : SPL8, LOC_Os04g56170

Description : transcription factor (SBP)


Gene families : OG0000121 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000121_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g56170.1
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00235390 SPL8,... RNA biosynthesis.transcriptional activation.SBP... 0.02 OrthoFinder output from all 47 species
AMTR_s00025p00217130 SPL2,... RNA biosynthesis.transcriptional activation.SBP... 0.02 OrthoFinder output from all 47 species
AMTR_s00047p00197010 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.03 OrthoFinder output from all 47 species
AMTR_s00106p00142470 SPL11,... RNA biosynthesis.transcriptional activation.SBP... 0.03 OrthoFinder output from all 47 species
AT1G02065 SPL8 squamosa promoter binding protein-like 8 0.05 OrthoFinder output from all 47 species
AT1G27360 SPL11 squamosa promoter-like 11 0.04 OrthoFinder output from all 47 species
AT2G33810 SPL3 squamosa promoter binding protein-like 3 0.03 OrthoFinder output from all 47 species
AT3G15270 SPL5 squamosa promoter binding protein-like 5 0.04 OrthoFinder output from all 47 species
Adi_g015320 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g112854 SPL10 SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g08078 SPL8 SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g17452 SPL8 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g06099 SPL8 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g13927 No alias SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27599 AtSPL9, SPL9 SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene23632.t1 SPL8, Aspi01Gene23632 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene26421.t1 SPL8, Aspi01Gene26421 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene32966.t1 SPL2, Aspi01Gene32966 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene61092.t1 SPL8, Aspi01Gene61092 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene67363.t1 SPL8, Aspi01Gene67363 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0048.g030445 SPL2 SBP-type transcription factor & original description: CDS=29-1837 0.03 OrthoFinder output from all 47 species
Azfi_s0147.g053031 SPL8 SBP-type transcription factor & original description: CDS=1-2847 0.03 OrthoFinder output from all 47 species
Azfi_s1185.g099051 No alias not classified & original description: CDS=1-531 0.03 OrthoFinder output from all 47 species
Azfi_s1820.g107212 No alias not classified & original description: CDS=1-336 0.05 OrthoFinder output from all 47 species
Cba_g75896 SPL2 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.07G099600.1 SPL13, SPL13A,... SBP-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.12G034000.1 SPL13, SPL13A,... SBP-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.20G021600.1 SPL2, Ceric.20G021600 SBP-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.29G007700.1 SPL2, Ceric.29G007700 SBP-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.39G052200.1 SPL8, Ceric.39G052200 SBP-type transcription factor & original description:... 0.05 OrthoFinder output from all 47 species
Cre02.g104700 SPL2 RNA biosynthesis.transcriptional activation.SBP... 0.05 OrthoFinder output from all 47 species
Cre02.g112750 No alias RNA biosynthesis.transcriptional activation.SBP... 0.03 OrthoFinder output from all 47 species
Cre16.g692500 AtSPL9, SPL9 RNA biosynthesis.transcriptional activation.SBP... 0.02 OrthoFinder output from all 47 species
Dcu_g12554 SPL2 SBP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g12555 SPL8 SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g13420 SPL3 SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g48961 SPL8 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g08477 AtSPL9, SPL9 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22823 SPL8 SBP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g23320 SPL2 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04651 SPL3 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05026 SPL8 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008556001 SPL13, SPL13A RNA biosynthesis.transcriptional activation.SBP... 0.04 OrthoFinder output from all 47 species
GSVIVT01018205001 SPL2 RNA biosynthesis.transcriptional activation.SBP... 0.04 OrthoFinder output from all 47 species
Gb_03921 SPL8 transcription factor (SBP) 0.03 OrthoFinder output from all 47 species
Gb_22010 SPL8 transcription factor (SBP) 0.02 OrthoFinder output from all 47 species
LOC_Os06g49010.4 SPL2, LOC_Os06g49010 transcription factor (SBP) 0.04 OrthoFinder output from all 47 species
LOC_Os07g32170.1 SPL4, LOC_Os07g32170 transcription factor (SBP) 0.05 OrthoFinder output from all 47 species
Len_g17980 SPL12 SBP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Mp1g10020.1 SPL8 transcription factor (SBP) 0.04 OrthoFinder output from all 47 species
Mp1g10030.1 SPL2 transcription factor (SBP) 0.03 OrthoFinder output from all 47 species
Msp_g12140 SPL2 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g07869 SPL2 SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23336 SPL3 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g43554 SPL8 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g15680 SPL8 SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26439 SPL10 SBP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g32512 SPL10 SBP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g37559 AtSPL9, SPL9 SBP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g25306 No alias SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g49101 SPL7, ATSPL7 regulatory protein *(SPL7) of copper homeostasis &... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006256 SPL2 SBP-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020524 SPL2 SBP-type transcription factor & original description: CDS=1-1641 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0118.g021215 SPL8 SBP-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sam_g24360 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g48834 No alias SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc05g015840.3.1 SPL13, SPL13A,... transcription factor (SBP) 0.06 OrthoFinder output from all 47 species
Solyc07g062980.4.1 SPL3, Solyc07g062980 transcription factor (SBP) 0.04 OrthoFinder output from all 47 species
Zm00001e006686_P001 SPL8, Zm00001e006686 transcription factor (SBP) 0.04 OrthoFinder output from all 47 species
Zm00001e010067_P001 AtSPL9, SPL9,... transcription factor (SBP) 0.03 OrthoFinder output from all 47 species
Zm00001e013198_P001 SPL2, Zm00001e013198 transcription factor (SBP) 0.07 OrthoFinder output from all 47 species
Zm00001e013761_P001 SPL2, Zm00001e013761 transcription factor (SBP) 0.03 OrthoFinder output from all 47 species
Zm00001e013795_P002 SPL8, Zm00001e013795 transcription factor (SBP) 0.05 OrthoFinder output from all 47 species
Zm00001e021425_P001 SPL13, SPL13A,... transcription factor (SBP) 0.04 OrthoFinder output from all 47 species
Zm00001e024385_P002 AtSPL9, SPL9,... transcription factor (SBP) 0.03 OrthoFinder output from all 47 species
Zm00001e025110_P001 SPL8, Zm00001e025110 transcription factor (SBP) 0.06 OrthoFinder output from all 47 species
Zm00001e025234_P001 SPL2, Zm00001e025234 transcription factor (SBP) 0.03 OrthoFinder output from all 47 species
Zm00001e028442_P002 SPL13, SPL13A,... transcription factor (SBP) 0.04 OrthoFinder output from all 47 species
Zm00001e030416_P001 SPL8, Zm00001e030416 transcription factor (SBP) 0.06 OrthoFinder output from all 47 species
Zm00001e034537_P001 AtSPL9, SPL9,... transcription factor (SBP) 0.05 OrthoFinder output from all 47 species
Zm00001e035060_P002 SPL4, Zm00001e035060 transcription factor (SBP) 0.04 OrthoFinder output from all 47 species
Zm00001e041526_P001 SPL3, Zm00001e041526 transcription factor (SBP) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0008610 lipid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004333 SBP_dom 185 259
No external refs found!