Aliases : LOC_Os04g58640
Description : component CPFS5/CFIm25 of Cleavage Factor I (CF-Im) complex
Gene families : OG0003646 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003646_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Aop_g02750 | No alias | component *(CPFS5/CFIm25) of Cleavage Factor I (CF-Im)... | 0.03 | OrthoFinder output from all 47 species | |
| Cre10.g462700 | No alias | RNA processing.RNA 3-end polyadenylation.Cleavage Factor... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01026851001 | No alias | RNA processing.RNA 3-end polyadenylation.Cleavage Factor... | 0.02 | OrthoFinder output from all 47 species | |
| Mp8g17730.1 | No alias | component CPFS5/CFIm25 of Cleavage Factor I (CF-Im) complex | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g12325 | No alias | component *(CPFS5/CFIm25) of Cleavage Factor I (CF-Im)... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e006497_P001 | Zm00001e006497 | component CPFS5/CFIm25 of Cleavage Factor I (CF-Im) complex | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003729 | mRNA binding | IEA | Interproscan |
| CC | GO:0005849 | mRNA cleavage factor complex | IEA | Interproscan |
| BP | GO:0006378 | mRNA polyadenylation | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000786 | nucleosome | IEP | HCCA |
| MF | GO:0003684 | damaged DNA binding | IEP | HCCA |
| BP | GO:0006289 | nucleotide-excision repair | IEP | HCCA |
| BP | GO:0006325 | chromatin organization | IEP | HCCA |
| BP | GO:0006334 | nucleosome assembly | IEP | HCCA |
| BP | GO:0006338 | chromatin remodeling | IEP | HCCA |
| BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | HCCA |
| MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
| MF | GO:0008270 | zinc ion binding | IEP | HCCA |
| BP | GO:0010498 | proteasomal protein catabolic process | IEP | HCCA |
| BP | GO:0019941 | modification-dependent protein catabolic process | IEP | HCCA |
| BP | GO:0022607 | cellular component assembly | IEP | HCCA |
| BP | GO:0030163 | protein catabolic process | IEP | HCCA |
| CC | GO:0032993 | protein-DNA complex | IEP | HCCA |
| BP | GO:0034728 | nucleosome organization | IEP | HCCA |
| BP | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043169 | cation binding | IEP | HCCA |
| BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | HCCA |
| BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
| CC | GO:0044815 | DNA packaging complex | IEP | HCCA |
| MF | GO:0046872 | metal ion binding | IEP | HCCA |
| BP | GO:0051603 | proteolysis involved in protein catabolic process | IEP | HCCA |
| BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | HCCA |
| CC | GO:0070531 | BRCA1-A complex | IEP | HCCA |
| CC | GO:0070552 | BRISC complex | IEP | HCCA |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | HCCA |
| BP | GO:1901565 | organonitrogen compound catabolic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR016706 | Cleav_polyA_spec_factor_su5 | 8 | 195 |
| No external refs found! |
