Aliases : LOC_Os04g58830
Description : component ARRS1 of ARPF2-ARRS1 complex
Gene families : OG0004436 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004436_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: LOC_Os04g58830.1 | |
| Cluster | HCCA: Cluster_60 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00058p00122560 | evm_27.TU.AmTr_v1... | Ribosome biogenesis regulatory protein homolog... | 0.07 | OrthoFinder output from all 47 species | |
| AT2G37990 | No alias | ribosome biogenesis regulatory protein (RRS1) family protein | 0.07 | OrthoFinder output from all 47 species | |
| Azfi_s0570.g077851 | No alias | component *(ARRS1) of ARPF2-ARRS1 complex & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.12G016900.1 | Ceric.12G016900 | component *(ARRS1) of ARPF2-ARRS1 complex & original... | 0.05 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000215.62 | No alias | Ribosome biogenesis regulatory protein homolog... | 0.02 | OrthoFinder output from all 47 species | |
| Cre01.g020950 | No alias | Ribosome biogenesis regulatory protein homolog... | 0.14 | OrthoFinder output from all 47 species | |
| GSVIVT01027072001 | No alias | Ribosome biogenesis regulatory protein homolog... | 0.11 | OrthoFinder output from all 47 species | |
| Gb_25591 | No alias | component ARRS1 of ARPF2-ARRS1 complex | 0.06 | OrthoFinder output from all 47 species | |
| Mp1g07840.1 | No alias | component ARRS1 of ARPF2-ARRS1 complex | 0.11 | OrthoFinder output from all 47 species | |
| Nbi_g06949 | No alias | component *(ARRS1) of ARPF2-ARRS1 complex & original... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g29092 | No alias | component *(ARRS1) of ARPF2-ARRS1 complex & original... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc12g006550.2.1 | Solyc12g006550 | component ARRS1 of ARPF2-ARRS1 complex | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e016688_P001 | Zm00001e016688 | component ARRS1 of ARPF2-ARRS1 complex | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e025915_P002 | Zm00001e025915 | component ARRS1 of ARPF2-ARRS1 complex | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005634 | nucleus | IEA | Interproscan |
| BP | GO:0042254 | ribosome biogenesis | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
| MF | GO:0005198 | structural molecule activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| CC | GO:0005840 | ribosome | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006412 | translation | IEP | HCCA |
| BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| MF | GO:0008097 | 5S rRNA binding | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| MF | GO:0019843 | rRNA binding | IEP | HCCA |
| BP | GO:0030490 | maturation of SSU-rRNA | IEP | HCCA |
| MF | GO:0030515 | snoRNA binding | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043603 | amide metabolic process | IEP | HCCA |
| BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR007023 | Ribosom_reg | 15 | 178 |
| No external refs found! |
