LOC_Os05g02890.1 (LOC_Os05g02890)

Aliases : LOC_Os05g02890

Description : subfamily ABCG transporter

Gene families : OG0000888 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000888_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os05g02890.1
Cluster	HCCA: Cluster_10

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00181450	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
AMTR_s00031p00236610	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
AT2G37360	No alias	ABC-2 type transporter family protein	0.04	OrthoFinder output from all 47 species
AT2G39350	No alias	ABC-2 type transporter family protein	0.04	OrthoFinder output from all 47 species
AT3G55110	No alias	ABC-2 type transporter family protein	0.03	OrthoFinder output from all 47 species
AT5G19410	No alias	ABC-2 type transporter family protein	0.04	OrthoFinder output from all 47 species
Als_g14907	No alias	subfamily ABCG transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene05499.t1	Aspi01Gene05499	subfamily ABCG transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene43486.t1	Aspi01Gene43486	ABC-G-type lipid transporter *(STR) & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0038.g026227	No alias	subfamily ABCG transporter & original description: CDS=1-2205	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020685.31	No alias	ABC transporter G family member 22 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
GSVIVT01014222001	No alias	ABC transporter G family member 10 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
GSVIVT01022346001	No alias	ABC transporter G family member 5 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
GSVIVT01025582001	No alias	Solute transport.primary active transport.ABC...	0.04	OrthoFinder output from all 47 species
GSVIVT01037274001	No alias	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
Gb_20468	No alias	subfamily ABCG transporter	0.04	OrthoFinder output from all 47 species
LOC_Os01g61940.1	LOC_Os01g61940	subfamily ABCG transporter	0.04	OrthoFinder output from all 47 species
Lfl_g39649	No alias	subfamily ABCG transporter & original description: none	0.03	OrthoFinder output from all 47 species
MA_10432886g0010	No alias	subfamily ABCG transporter	0.02	OrthoFinder output from all 47 species
Mp5g05620.1	No alias	subfamily ABCG transporter	0.03	OrthoFinder output from all 47 species
Mp5g15770.1	No alias	subfamily ABCG transporter	0.03	OrthoFinder output from all 47 species
Mp5g17950.1	No alias	subfamily ABCG transporter	0.04	OrthoFinder output from all 47 species
Msp_g23417	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g32502	No alias	ABC-G-type lipid transporter *(STR) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g61308	No alias	ABC-G-type lipid transporter *(STR) & original description: none	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023718	No alias	not classified & original description: CDS=1-2514	0.03	OrthoFinder output from all 47 species
Smo88976	No alias	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
Solyc07g062630.1.1	Solyc07g062630	subfamily ABCG transporter	0.02	OrthoFinder output from all 47 species
Solyc09g005970.1.1	Solyc09g005970	subfamily ABCG transporter	0.03	OrthoFinder output from all 47 species
Spa_g29782	No alias	subfamily ABCG transporter & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g37465	No alias	ABC-G-type lipid transporter *(STR) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g41222	No alias	ABC-G-type lipid transporter *(STR) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e001269_P001	Zm00001e001269	subfamily ABCG transporter	0.02	OrthoFinder output from all 47 species
Zm00001e020697_P001	Zm00001e020697	subfamily ABCG transporter	0.02	OrthoFinder output from all 47 species
Zm00001e031556_P001	Zm00001e031556	subfamily ABCG transporter	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0003885	D-arabinono-1,4-lactone oxidase activity	IEP	HCCA
MF	GO:0004402	histone acetyltransferase activity	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
MF	GO:0016899	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor	IEP	HCCA
CC	GO:0018995	host cellular component	IEP	HCCA
CC	GO:0033643	host cell part	IEP	HCCA
CC	GO:0033646	host intracellular part	IEP	HCCA
CC	GO:0033647	host intracellular organelle	IEP	HCCA
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	HCCA
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	HCCA
CC	GO:0042025	host cell nucleus	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013525	ABC_2_trans	395	603
IPR003439	ABC_transporter-like_ATP-bd	79	231

External Links

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LOC_Os05g02890.1 (LOC_Os05g02890)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation