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  5. LOC_Os05g04600.1

LOC_Os05g04600.1 (PGP11, LOC_Os05g04600)


Aliases : PGP11, LOC_Os05g04600

Description : ABC transporter B family member 4 OS=Arabidopsis thaliana (sp|o80725|ab4b_arath : 257.0)


Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g04600.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00109940 PGP11,... Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
Aev_g39147 No alias subfamily ABCB transporter & original description: none 0.01 OrthoFinder output from all 47 species
Als_g18811 PGP11 subfamily ABCB transporter & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g18500 ABCB19,... subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.36G047800.1 Ceric.36G047800 subfamily ABCB transporter & original description:... 0.05 OrthoFinder output from all 47 species
Dac_g37248 PGP9 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g00972 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g09158 PGP11 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g29451 ABCB19,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_10215 No alias subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
LOC_Os05g47490.1 PGP11, LOC_Os05g47490 subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species
LOC_Os05g47500.1 PGP9, LOC_Os05g47500 subfamily ABCB transporter 0.09 OrthoFinder output from all 47 species
Len_g57621 PGP11 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
MA_10429045g0010 No alias ABC transporter B family member 15 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
MA_3448627g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_6870g0010 No alias subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Msp_g34237 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g28031 ABCB19,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c17_16450V3.1 ABCB19,... ATP binding cassette subfamily B19 0.02 OrthoFinder output from all 47 species
Ppi_g17653 PGP1, ABCB1, ATPGP1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e041760_P001 ABCB19,... auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 71 272
No external refs found!