LOC_Os05g05780.1 (CHR11, LOC_Os05g05780)

Aliases : CHR11, LOC_Os05g05780

Description : chromatin remodeling factor (Iswi)

Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os05g05780.1

Target	Alias	Description	ECC score	Gene Family Method
Adi_g061147	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.02	OrthoFinder output from all 47 species
Ala_g06279	CHR17	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.02	OrthoFinder output from all 47 species
Ala_g12634	PKL, GYM, CHR6,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene50700.t1	PKR1, CHR4,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Cba_g16449	CHR17	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.04	OrthoFinder output from all 47 species
Cba_g33620	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000802.67	ATCHR12	Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000983.26	CHR5	RNA biosynthesis.RNA polymerase II-dependent...	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020960.24	CHR5	Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021275.25	CHR11	Probable chromatin-remodeling complex ATPase chain...	0.01	OrthoFinder output from all 47 species
Cre03.g158550	PKL, GYM, CHR6,...	CHD3-type chromatin-remodeling factor PICKLE...	0.01	OrthoFinder output from all 47 species
Cre03.g179300	CHR5	RNA biosynthesis.RNA polymerase II-dependent...	0.01	OrthoFinder output from all 47 species
Dcu_g03207	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.02	OrthoFinder output from all 47 species
Dcu_g03216	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.02	OrthoFinder output from all 47 species
Dde_g09827	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g18387	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
GSVIVT01012117001	PKR1, CHR4	RNA biosynthesis.transcriptional activation.PHD finger...	0.02	OrthoFinder output from all 47 species
GSVIVT01037235001	CHR5	RNA biosynthesis.RNA polymerase II-dependent...	0.03	OrthoFinder output from all 47 species
Lfl_g06769	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.02	OrthoFinder output from all 47 species
Lfl_g28014	PKL, GYM, CHR6,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Mp4g00040.1	PKR1, CHR4	chromatin remodeling factor (Chd3/Mi-2)	0.02	OrthoFinder output from all 47 species
Pnu_g27055	PKL, GYM, CHR6,...	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017101	CHR17	not classified & original description: CDS=1-2349	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003682	chromatin binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0031491	nucleosome binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	588	700
IPR015194	ISWI_HAND-dom	850	930
IPR015195	SLIDE	991	1101
IPR000330	SNF2_N	298	565

External Links

No external refs found!

LOC_Os05g05780.1 (CHR11, LOC_Os05g05780)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation