1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os05g13620.1

LOC_Os05g13620.1 (LOC_Os05g13620)


Aliases : LOC_Os05g13620

Description : Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba (sp|p49311|grp2_sinal : 87.0)


Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g13620.1
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
AT4G39260 CCR1, GR-RBP8,... cold, circadian rhythm, and RNA binding 1 0.02 OrthoFinder output from all 47 species
Aev_g09046 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g38249 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g01618 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g35268 CCR2, ATGRP7,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene16813.t1 GRP2, ATGRP2,... RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene16822.t1 GRP2, ATGRP2,... RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene35297.t1 GRP2, ATGRP2,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0232.g059291 GRP2, ATGRP2, GR-RBP2 not classified & original description: CDS=1-585 0.03 OrthoFinder output from all 47 species
Ore_g32937 CCR2, ATGRP7,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g47281 GR-RBP4, GRP4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g31703 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000635 GR-RBP3 RNA editing factor *(ORRM3) & original description: CDS=202-855 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004547 GRP2, ATGRP2, GR-RBP2 not classified & original description: CDS=1-549 0.03 OrthoFinder output from all 47 species
Solyc07g063900.3.1 Solyc07g063900 RNA editing factor (ORRM) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 25 93
No external refs found!