LOC_Os05g28750.1 (LOC_Os05g28750)

Aliases : LOC_Os05g28750

Description : component RPL29 of LSU proteome component

Gene families : OG0004690 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004690_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os05g28750.1
Cluster	HCCA: Cluster_14

Target	Alias	Description	ECC score	Gene Family Method
AT3G06680	No alias	Ribosomal L29e protein family	0.05	OrthoFinder output from all 47 species
AT3G06700	No alias	Ribosomal L29e protein family	0.17	OrthoFinder output from all 47 species
Azfi_s0095.g043647	No alias	component *(eL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.22G077900.1	Ceric.22G077900	component *(eL29) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Ceric.39G032900.1	Ceric.39G032900	component *(eL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000269.24	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Cre03.g207050	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
Dac_g14001	No alias	component *(eL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Gb_37735	No alias	component RPL29 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Len_g34825	No alias	component *(eL29) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Mp1g23580.1	No alias	component RPL29 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Pp3c1_34380V3.1	Pp3c1_34380	Ribosomal L29e protein family	0.03	OrthoFinder output from all 47 species
Smo228166	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002673	Ribosomal_L29e	3	42

External Links

No external refs found!

LOC_Os05g28750.1 (LOC_Os05g28750)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation