LOC_Os05g43840.1 (WL4, SnRK3.9, CIPK12,...)

Aliases : WL4, SnRK3.9, CIPK12, ATWL4, LOC_Os05g43840

Description : SNF1-related protein kinase (SnRK3)

Gene families : OG0000065 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os05g43840.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00220190	PKS18, CIPK20,...	Protein modification.phosphorylation.CAMK kinase...	0.06	OrthoFinder output from all 47 species
AMTR_s00007p00222430	CIPK19, SnRK3.5,...	Protein modification.phosphorylation.CAMK kinase...	0.03	OrthoFinder output from all 47 species
AT5G58380	PKS2, CIPK10,...	SOS3-interacting protein 1	0.06	OrthoFinder output from all 47 species
Adi_g010519	SnRK3.23,...	EC_2.7 transferase transferring phosphorus-containing...	0.04	OrthoFinder output from all 47 species
Adi_g013144	SnRK3.12, PKS6, CIPK9	EC_2.7 transferase transferring phosphorus-containing...	0.03	OrthoFinder output from all 47 species
Aop_g08330	KIN10, SNRK1.1, AKIN10	EC_2.7 transferase transferring phosphorus-containing...	0.04	OrthoFinder output from all 47 species
Aop_g11151	SnRK3.12, PKS6, CIPK9	EC_2.7 transferase transferring phosphorus-containing...	0.03	OrthoFinder output from all 47 species
Aop_g13255	SnRK3.23,...	EC_2.7 transferase transferring phosphorus-containing...	0.04	OrthoFinder output from all 47 species
Aop_g13831	SnRK3.12, PKS6, CIPK9	EC_2.7 transferase transferring phosphorus-containing...	0.04	OrthoFinder output from all 47 species
Azfi_s0117.g046534	SnRK3.23,...	EC_2.7 transferase transferring phosphorus-containing...	0.02	OrthoFinder output from all 47 species
Ceric.02G056100.1	SnRK3.23,...	EC_2.7 transferase transferring phosphorus-containing...	0.03	OrthoFinder output from all 47 species
Ceric.06G007300.1	SNRK3.11, SOS2,...	EC_2.7 transferase transferring phosphorus-containing...	0.02	OrthoFinder output from all 47 species
Ceric.16G005500.1	CIPK3, SnRK3.17,...	EC_2.7 transferase transferring phosphorus-containing...	0.03	OrthoFinder output from all 47 species
Ceric.18G062300.1	CIPK3, SnRK3.17,...	EC_2.7 transferase transferring phosphorus-containing...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000147.25	KIN10, SNRK1.1, AKIN10	Multi-process regulation.SnRK1 metabolic regulator...	0.01	OrthoFinder output from all 47 species
Dde_g48229	SnRK3.12, PKS6, CIPK9	EC_2.7 transferase transferring phosphorus-containing...	0.04	OrthoFinder output from all 47 species
LOC_Os03g03510.1	SnRK3.12, PKS6,...	SNF1-related protein kinase (SnRK3)	0.05	OrthoFinder output from all 47 species
Len_g08809	SnRK3.23,...	EC_2.7 transferase transferring phosphorus-containing...	0.03	OrthoFinder output from all 47 species
Mp1g05680.1	SnRK3.23,...	SNF1-related protein kinase (SnRK3)	0.02	OrthoFinder output from all 47 species
Nbi_g29648	SnRK3.23,...	EC_2.7 transferase transferring phosphorus-containing...	0.04	OrthoFinder output from all 47 species
Pir_g02528	SnRK3.12, PKS6, CIPK9	EC_2.7 transferase transferring phosphorus-containing...	0.03	OrthoFinder output from all 47 species
Pir_g18186	SnRK3.23,...	EC_2.7 transferase transferring phosphorus-containing...	0.04	OrthoFinder output from all 47 species
Ppi_g60131	KIN10, SNRK1.1, AKIN10	EC_2.7 transferase transferring phosphorus-containing...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0178.g024705	SnRK3.12, PKS6, CIPK9	EC_2.7 transferase transferring phosphorus-containing...	0.02	OrthoFinder output from all 47 species
Solyc05g052270.3.1	PKS2, CIPK10,...	SNF1-related protein kinase (SnRK3)	0.05	OrthoFinder output from all 47 species
Spa_g07887	SNRK3.11, SOS2,...	EC_2.7 transferase transferring phosphorus-containing...	0.02	OrthoFinder output from all 47 species
Zm00001e026022_P001	PKS18, CIPK20,...	SNF1-related protein kinase (SnRK3)	0.03	OrthoFinder output from all 47 species
Zm00001e027413_P002	WL4, SnRK3.9,...	SNF1-related protein kinase (SnRK3)	0.03	OrthoFinder output from all 47 species
Zm00001e029014_P003	PKS18, CIPK20,...	SNF1-related protein kinase (SnRK3)	0.02	OrthoFinder output from all 47 species
Zm00001e037422_P004	SNRK3.11, SOS2,...	SNF1-related protein kinase (SnRK3). protein kinase (SOS2)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004672	protein kinase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006468	protein phosphorylation	IEA	Interproscan
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007165	signal transduction	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016301	kinase activity	None	Extended
BP	GO:0016310	phosphorylation	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003729	mRNA binding	IEP	HCCA
CC	GO:0005849	mRNA cleavage factor complex	IEP	HCCA
BP	GO:0006378	mRNA polyadenylation	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
MF	GO:0009916	alternative oxidase activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	IEP	HCCA
MF	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031124	mRNA 3'-end processing	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0043631	RNA polyadenylation	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000719	Prot_kinase_dom	37	291
IPR004041	NAF_dom	376	431

External Links

No external refs found!

LOC_Os05g43840.1 (WL4, SnRK3.9, CIPK12,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation