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  5. LOC_Os05g45020.1

LOC_Os05g45020.1 (ATTZF1, ATCTH, LOC_Os05g45020)


Aliases : ATTZF1, ATCTH, LOC_Os05g45020

Description : mRNA-binding regulatory factor (TZF)


Gene families : OG0000156 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000156_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g45020.1
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AT1G03790 SOM Zinc finger C-x8-C-x5-C-x3-H type family protein 0.02 OrthoFinder output from all 47 species
AT2G19810 No alias CCCH-type zinc finger family protein 0.04 OrthoFinder output from all 47 species
AT2G40140 SZF2, ATSZF2, ZFAR1, CZF1 zinc finger (CCCH-type) family protein 0.03 OrthoFinder output from all 47 species
AT4G29190 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.03 OrthoFinder output from all 47 species
AT5G07500 PEI1 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.05 OrthoFinder output from all 47 species
Adi_g046911 ATTZF1, ATCTH regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Adi_g049127 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Adi_g075797 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Als_g05611 ATTZF1, ATCTH regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Aob_g07949 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Aop_g14168 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Aop_g21643 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Aspi01Gene30050.t1 Aspi01Gene30050 regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Ceric.04G078500.1 Ceric.04G078500 regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Ceric.17G068000.1 ATTZF1, ATCTH,... regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Ceric.1Z168000.1 ATTZF1, ATCTH,... regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Ceric.24G025600.1 ATTZF1, ATCTH,... regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Cre03.g146267 ATTZF1, ATCTH RNA biosynthesis.transcriptional activation.C3H zinc... 0.01 OrthoFinder output from all 47 species
Dac_g22345 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Ehy_g05999 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Ehy_g08570 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
GSVIVT01013901001 PEI1 RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 OrthoFinder output from all 47 species
GSVIVT01015265001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.02 OrthoFinder output from all 47 species
LOC_Os12g33090.1 LOC_Os12g33090 mRNA-binding regulatory factor (TZF) 0.02 OrthoFinder output from all 47 species
Msp_g10175 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Ore_g20985 ATTZF1, ATCTH regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Ore_g29320 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Ore_g35856 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Ppi_g10785 ATTZF1, ATCTH regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004066 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Sam_g17505 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Solyc05g043247.1.1 ATTZF1, ATCTH,... mRNA-binding regulatory factor (TZF) 0.03 OrthoFinder output from all 47 species
Solyc06g082010.4.1 Solyc06g082010 mRNA-binding regulatory factor (TZF) 0.02 OrthoFinder output from all 47 species
Solyc07g053750.1.1 SOM, Solyc07g053750 mRNA-binding regulatory factor (TZF) 0.04 OrthoFinder output from all 47 species
Solyc09g014640.2.1 PEI1, Solyc09g014640 mRNA-binding regulatory factor (TZF) 0.03 OrthoFinder output from all 47 species
Solyc12g008660.1.1 Solyc12g008660 mRNA-binding regulatory factor (TZF) 0.02 OrthoFinder output from all 47 species
Spa_g53900 ATTZF1, ATCTH regulatory factor *(TZF) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
Tin_g14922 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Zm00001e016582_P001 Zm00001e016582 mRNA-binding regulatory factor (TZF) 0.03 OrthoFinder output from all 47 species
Zm00001e027132_P001 Zm00001e027132 mRNA-binding regulatory factor (TZF) 0.03 OrthoFinder output from all 47 species
Zm00001e027454_P001 ATTZF1, ATCTH,... mRNA-binding regulatory factor (TZF) 0.03 OrthoFinder output from all 47 species
Zm00001e027566_P001 Zm00001e027566 mRNA-binding regulatory factor (TZF) 0.04 OrthoFinder output from all 47 species
Zm00001e029465_P001 Zm00001e029465 mRNA-binding regulatory factor (TZF) 0.02 OrthoFinder output from all 47 species
Zm00001e032199_P001 ATTZF1, ATCTH,... mRNA-binding regulatory factor (TZF) 0.04 OrthoFinder output from all 47 species
Zm00001e035805_P001 PEI1, Zm00001e035805 mRNA-binding regulatory factor (TZF) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003993 acid phosphatase activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 102 126
No external refs found!