LOC_Os05g47480.1 (LOC_Os05g47480)

Aliases : LOC_Os05g47480

Description : Transcription initiation factor IIB OS=Oryza sativa subsp. japonica (sp|q8w0w3|tf2b_orysj : 258.0)

Gene families : OG0001894 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001894_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os05g47480.1

Target	Alias	Description	ECC score	Gene Family Method	Actions
Ehy_g18142	No alias	basal transcription factor *(TFIIb) & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0008134	transcription factor binding	None	Extended
MF	GO:0017025	TBP-class protein binding	IEA	Interproscan
MF	GO:0140296	general transcription initiation factor binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005215	transporter activity	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013150	TFIIB_cyclin	123	189
IPR013150	TFIIB_cyclin	231	299
IPR013137	Znf_TFIIB	11	53

External Links

No external refs found!