LOC_Os05g49320.1 (RPL12-C, LOC_Os05g49320)

Aliases : RPL12-C, LOC_Os05g49320

Description : component psRPL12 of large ribosomal subunit proteome

Gene families : OG0004015 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004015_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os05g49320.1
Cluster	HCCA: Cluster_59

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00036p00109340	RPL12-A, RPL12,...	Protein biosynthesis.organelle translation...	0.1	OrthoFinder output from all 47 species
AT3G27830	RPL12-A, RPL12	ribosomal protein L12-A	0.13	OrthoFinder output from all 47 species
AT3G27850	RPL12-C	ribosomal protein L12-C	0.21	OrthoFinder output from all 47 species
Adi_g079765	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aev_g42507	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aev_g46439	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ala_g28151	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Als_g10576	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Als_g18386	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Als_g26767	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Aop_g05079	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Azfi_s0003.g007798	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Cba_g11026	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Cba_g26147	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ceric.11G086700.1	RPL12-C, Ceric.11G086700	component *(bL12c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ceric.23G047100.1	RPL12-A, RPL12,...	component *(bL12c) of large plastid ribosomal-subunit...	0.12	OrthoFinder output from all 47 species
Cre13.g581650	No alias	Protein biosynthesis.organelle translation...	0.11	OrthoFinder output from all 47 species
Dac_g04548	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Dcu_g09157	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Dcu_g15795	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.13	OrthoFinder output from all 47 species
Dde_g20806	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01032454001	RPL12-A, RPL12	Protein biosynthesis.organelle translation...	0.1	OrthoFinder output from all 47 species
Gb_05150	RPL12-C	component psRPL12 of large ribosomal subunit proteome	0.08	OrthoFinder output from all 47 species
Len_g10218	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Len_g17443	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Mp5g15720.1	RPL12-C	component psRPL12 of large ribosomal subunit proteome	0.2	OrthoFinder output from all 47 species
Msp_g09960	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Msp_g10664	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Nbi_g08072	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Ore_g01687	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ore_g06697	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Pir_g06429	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Pp3c26_10990V3.1	RPL12-A, RPL12,...	ribosomal protein L12-A	0.05	OrthoFinder output from all 47 species
Pp3c4_24130V3.1	RPL12-A, RPL12,...	ribosomal protein L12-C	0.08	OrthoFinder output from all 47 species
Pp3c5_2700V3.1	RPL12-C, Pp3c5_2700	ribosomal protein L12-C	0.08	OrthoFinder output from all 47 species
Sacu_v1.1_s0097.g019415	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Sam_g51250	No alias	component *(bL12c) of large plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Solyc02g086730.3.1	RPL12-C, Solyc02g086730	component psRPL12 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
Solyc02g086740.1.1	RPL12-C, Solyc02g086740	component psRPL12 of large ribosomal subunit proteome	0.13	OrthoFinder output from all 47 species
Spa_g08718	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Spa_g56005	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Tin_g00273	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Zm00001e020247_P001	RPL12-C, Zm00001e020247	component psRPL12 of large ribosomal subunit proteome	0.15	OrthoFinder output from all 47 species
Zm00001e028001_P001	RPL12-C, Zm00001e028001	component psRPL12 of large ribosomal subunit proteome	0.25	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	HCCA
MF	GO:0005381	iron ion transmembrane transporter activity	IEP	HCCA
BP	GO:0006450	regulation of translational fidelity	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0006826	iron ion transport	IEP	HCCA
MF	GO:0008171	O-methyltransferase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0010207	photosystem II assembly	IEP	HCCA
BP	GO:0015994	chlorophyll metabolic process	IEP	HCCA
BP	GO:0015995	chlorophyll biosynthetic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0034755	iron ion transmembrane transport	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042440	pigment metabolic process	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0046148	pigment biosynthetic process	IEP	HCCA
MF	GO:0046406	magnesium protoporphyrin IX methyltransferase activity	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0065008	regulation of biological quality	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR008932	Ribosomal_L7/L12_oligo	54	100
IPR013823	Ribosomal_L7/L12_C	112	178

External Links

No external refs found!

LOC_Os05g49320.1 (RPL12-C, LOC_Os05g49320)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation