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  5. LOC_Os05g51480.1

LOC_Os05g51480.1 (DDB1A, LOC_Os05g51480)


Aliases : DDB1A, LOC_Os05g51480

Description : component DDB1 of UV-damaged DNA-binding protein (UV-DDB) heterodimer. core adaptor component DDB1 of COP10-DET1 (CDD) subcomplex. core adapter component (DDB1) of CUL4-DDB1 ubiquitination complex


Gene families : OG0004030 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004030_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g51480.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00145060 DDB1A,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AT4G05420 DDB1A damaged DNA binding protein 1A 0.04 OrthoFinder output from all 47 species
AT4G21100 DDB1B damaged DNA binding protein 1B 0.02 OrthoFinder output from all 47 species
Adi_g015691 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.02 OrthoFinder output from all 47 species
Adi_g114746 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.02 OrthoFinder output from all 47 species
Aev_g07979 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.02 OrthoFinder output from all 47 species
Ala_g09123 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.05 OrthoFinder output from all 47 species
Aop_g09805 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.03 OrthoFinder output from all 47 species
Azfi_s0382.g067410 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.02 OrthoFinder output from all 47 species
Cba_g02733 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.02 OrthoFinder output from all 47 species
Ceric.30G020500.1 DDB1A, Ceric.30G020500 core adaptor component *(DDB1) of CUL4-based E3... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000851.24 DDB1A Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
Cre10.g432000 DDB1A Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Dde_g02981 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.04 OrthoFinder output from all 47 species
Ehy_g01666 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.04 OrthoFinder output from all 47 species
GSVIVT01021587001 DDB1A Protein degradation.peptide tagging.Ubiquitin... 0.06 OrthoFinder output from all 47 species
Gb_36569 DDB1A component DDB1 of UV-damaged DNA-binding protein... 0.06 OrthoFinder output from all 47 species
Lfl_g16439 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.03 OrthoFinder output from all 47 species
MA_41156g0010 DDB1A component DDB1 of UV-damaged DNA-binding protein... 0.07 OrthoFinder output from all 47 species
Mp4g15990.1 DDB1A component DDB1 of UV-damaged DNA-binding protein... 0.03 OrthoFinder output from all 47 species
Ore_g15533 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.05 OrthoFinder output from all 47 species
Sam_g12601 No alias core adaptor component *(DDB1) of CUL4-based E3... 0.03 OrthoFinder output from all 47 species
Smo145521 DDB1A Protein degradation.peptide tagging.Ubiquitin... 0.05 OrthoFinder output from all 47 species
Solyc02g021650.3.1 DDB1A, Solyc02g021650 component DDB1 of UV-damaged DNA-binding protein... 0.09 OrthoFinder output from all 47 species
Spa_g04425 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.02 OrthoFinder output from all 47 species
Zm00001e026665_P002 DDB1A, Zm00001e026665 component DDB1 of UV-damaged DNA-binding protein... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0017150 tRNA dihydrouridine synthase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0106413 dihydrouridine synthase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 747 1059
No external refs found!