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  5. LOC_Os05g51500.1

LOC_Os05g51500.1 (LOC_Os05g51500)


Aliases : LOC_Os05g51500

Description : Met-tRNA positioning component eIF5B of initiator tRNA carrier complex


Gene families : OG0003112 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003112_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g51500.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AMTR_s02879p00004340 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
Adi_g012011 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.05 OrthoFinder output from all 47 species
Aev_g12293 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.02 OrthoFinder output from all 47 species
Aev_g37468 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.03 OrthoFinder output from all 47 species
Aop_g09056 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g35971 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.02 OrthoFinder output from all 47 species
Ehy_g14997 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.03 OrthoFinder output from all 47 species
GSVIVT01034895001 No alias Protein biosynthesis.translation initiation.eIF5B... 0.03 OrthoFinder output from all 47 species
Gb_28583 No alias Met-tRNA positioning component eIF5B of initiator tRNA... 0.02 OrthoFinder output from all 47 species
MA_289g0020 No alias Met-tRNA positioning component eIF5B of initiator tRNA... 0.05 OrthoFinder output from all 47 species
Ore_g33223 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.03 OrthoFinder output from all 47 species
Sam_g25594 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.05 OrthoFinder output from all 47 species
Smo166557 No alias Protein biosynthesis.translation initiation.eIF5B... 0.03 OrthoFinder output from all 47 species
Solyc03g058350.4.1 Solyc03g058350 Met-tRNA positioning component eIF5B of initiator tRNA... 0.12 OrthoFinder output from all 47 species
Solyc03g058390.2.1 Solyc03g058390 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Solyc06g054400.3.1 Solyc06g054400 Met-tRNA positioning component eIF5B of initiator tRNA... 0.09 OrthoFinder output from all 47 species
Spa_g56625 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.02 OrthoFinder output from all 47 species
Zm00001e026670_P001 Zm00001e026670 Met-tRNA positioning component eIF5B of initiator tRNA... 0.14 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR023115 TIF_IF2_dom3 960 1054
IPR000795 T_Tr_GTP-bd_dom 618 826
IPR004161 EFTu-like_2 853 931
No external refs found!