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  5. LOC_Os06g01200.1

LOC_Os06g01200.1 (LOC_Os06g01200)


Aliases : LOC_Os06g01200

Description : E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum (sp|p0ch30|ring1_goshi : 172.0)


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g01200.1
Cluster HCCA: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
AT1G26800 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G40830 RHC1A RING-H2 finger C1A 0.02 OrthoFinder output from all 47 species
AT3G13430 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G60080 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G56340 ATCRT1 RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g012553 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Adi_g019630 ATCRT1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g020451 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g103586 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g02298 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aev_g02428 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g03172 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g03081 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aop_g29180 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene58136.t1 Aspi01Gene58136 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0006.g010490 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Cba_g13505 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G061800.1 Ceric.02G061800 RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ceric.32G049400.1 Ceric.32G049400 not classified & original description: pacid=50598110... 0.02 OrthoFinder output from all 47 species
Dac_g07739 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g01534 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ehy_g01127 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13089 RHC1A not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g30061 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01029345001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.06 OrthoFinder output from all 47 species
Gb_22124 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.03 OrthoFinder output from all 47 species
Gb_22125 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g48692 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g03286 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Lfl_g05536 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g10238 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Lfl_g11310 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g18639 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g27734 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Lfl_g30265 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_79051g0010 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.02 OrthoFinder output from all 47 species
MA_8499g0020 CIP8 E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Ore_g15069 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g25104 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pir_g36158 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g40250 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g61153 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g08830 RHC1A RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ppi_g56162 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g05103 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc05g007895.1.1 Solyc05g007895 E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc05g018050.1.1 Solyc05g018050 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc09g074460.3.1 CIP8, Solyc09g074460 E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc12g008440.1.1 Solyc12g008440 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g55156 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e003411_P001 Zm00001e003411 E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e010857_P001 Zm00001e010857 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e011788_P002 Zm00001e011788 E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
Zm00001e016135_P001 Zm00001e016135 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e036731_P001 Zm00001e036731 E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Zm00001e037527_P001 Zm00001e037527 E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e038273_P001 Zm00001e038273 E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0071985 multivesicular body sorting pathway IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR039525 RNF126-like_zinc-ribbon 9 45
IPR001841 Znf_RING 201 243
No external refs found!