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  5. LOC_Os06g08320.1

LOC_Os06g08320.1 (LOC_Os06g08320)


Aliases : LOC_Os06g08320

Description : component RPL39 of LSU proteome component


Gene families : OG0008672 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008672_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g08320.1
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
AT2G25210 No alias Ribosomal protein L39 family protein 0.04 OrthoFinder output from all 47 species
AT3G02190 No alias Ribosomal protein L39 family protein 0.03 OrthoFinder output from all 47 species
AT4G31985 No alias Ribosomal protein L39 family protein 0.04 OrthoFinder output from all 47 species
Ceric.08G063600.1 Ceric.08G063600 component *(eL39) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01035913001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
MA_92282g0010 No alias component RPL39 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Mp1g26960.1 No alias component RPL39 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Pp3c15_14860V3.1 Pp3c15_14860 Ribosomal protein L39 family protein 0.01 OrthoFinder output from all 47 species
Pp3c6_610V3.1 Pp3c6_610 Ribosomal protein L39 family protein 0.03 OrthoFinder output from all 47 species
Solyc07g005050.3.1 Solyc07g005050 component RPL39 of LSU proteome component 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
CC GO:0008250 oligosaccharyltransferase complex IEP HCCA
CC GO:0034998 oligosaccharyltransferase I complex IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR000077 Ribosomal_L39 1 33
No external refs found!