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  5. LOC_Os06g09290.2

LOC_Os06g09290.2 (RPT1A, LOC_Os06g09290)


Aliases : RPT1A, LOC_Os06g09290

Description : regulatory component RPT1 of 26S proteasome


Gene families : OG0004346 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004346_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g09290.2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00131p00084690 RPT1A,... Protein degradation.26S proteasome.regulatory... 0.02 OrthoFinder output from all 47 species
AT1G53750 RPT1A regulatory particle triple-A 1A 0.06 OrthoFinder output from all 47 species
Adi_g060638 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Aev_g11650 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Ala_g10482 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Als_g23809 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Aop_g01687 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Azfi_s0051.g031375 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Cba_g07403 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Cba_g78469 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Ceric.30G008600.1 RPT1A, Ceric.30G008600 regulatory component *(RPT1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021464.16 RPT1A Protein degradation.26S proteasome.regulatory... 0.02 OrthoFinder output from all 47 species
Cre14.g625400 RPT1A Protein degradation.26S proteasome.regulatory... 0.07 OrthoFinder output from all 47 species
Dcu_g01171 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Dde_g03314 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Gb_11942 RPT1A regulatory component RPT1 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Len_g10926 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
MA_10435556g0010 RPT1A regulatory component RPT1 of 26S proteasome 0.02 OrthoFinder output from all 47 species
Mp2g04840.1 RPT1A regulatory component RPT1 of 26S proteasome 0.06 OrthoFinder output from all 47 species
Msp_g08271 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Nbi_g10523 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Pp3c20_1430V3.1 RPT1A, Pp3c20_1430 regulatory particle triple-A 1A 0.02 OrthoFinder output from all 47 species
Ppi_g24720 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008081 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Sam_g36043 No alias regulatory component *(RPT1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Smo146742 RPT1A Protein degradation.26S proteasome.regulatory... 0.06 OrthoFinder output from all 47 species
Solyc03g123730.4.1 RPT1A, Solyc03g123730 regulatory component RPT1 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Solyc06g063140.4.1 RPT1A, Solyc06g063140 regulatory component RPT1 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Spa_g06127 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Zm00001e016066_P001 RPT1A, Zm00001e016066 regulatory component RPT1 of 26S proteasome 0.05 OrthoFinder output from all 47 species
Zm00001e023743_P001 RPT1A, Zm00001e023743 regulatory component RPT1 of 26S proteasome 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
CC GO:0030176 obsolete integral component of endoplasmic reticulum membrane IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 205 337
No external refs found!