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  5. LOC_Os06g10800.1

LOC_Os06g10800.1 (LOC_Os06g10800)


Aliases : LOC_Os06g10800

Description : Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana (sp|o22197|rhc1a_arath : 123.0)


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g10800.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g019630 ATCRT1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05358 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010490 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ore_g43638 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pir_g23528 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e039308_P001 Zm00001e039308 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 187 229
IPR039525 RNF126-like_zinc-ribbon 19 53
No external refs found!