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  5. LOC_Os06g19680.1

LOC_Os06g19680.1 (LOC_Os06g19680)


Aliases : LOC_Os06g19680

Description : ubiquitin ligase component HRD1 of ER-associated protein degradation (ERAD) machinery


Gene families : OG0003518 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003518_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g19680.1

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene57661.t1 Aspi01Gene57661 E3 ubiquitin ligase component *(HRD1) of ER-associated... 0.02 OrthoFinder output from all 47 species
GSVIVT01024416001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
MA_892125g0010 No alias ubiquitin ligase component HRD1 of ER-associated protein... 0.03 OrthoFinder output from all 47 species
Mp1g18190.1 No alias ubiquitin ligase component HRD1 of ER-associated protein... 0.02 OrthoFinder output from all 47 species
Solyc03g096930.4.1 Solyc03g096930 ubiquitin ligase component HRD1 of ER-associated protein... 0.05 OrthoFinder output from all 47 species
Tin_g08347 No alias E3 ubiquiTin ligase component *(HRD1) of ER-associated... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008417 fucosyltransferase activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016972 thiol oxidase activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 291 330
No external refs found!