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  5. LOC_Os06g37000.2

LOC_Os06g37000.2 (LOC_Os06g37000)


Aliases : LOC_Os06g37000

Description : Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana (sp|q8w034|rnp1_arath : 147.0)


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g37000.2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00185510 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT5G55550 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 OrthoFinder output from all 47 species
Adi_g013859 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g056344 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g059747 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g102182 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g107999 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g19414 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g64152 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g12260 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g26376 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene26270.t1 Aspi01Gene26270 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g09256 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g09693 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g09694 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g76606 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g03739 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g15186 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g02177 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01030040001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01037771001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_16979 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_13606g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MpVg00970.1 No alias No annotation 0.02 OrthoFinder output from all 47 species
Msp_g14339 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g21023 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03296 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g00523 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09717 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g08248 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25221 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50608 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc02g093340.3.1 Solyc02g093340 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Tin_g15312 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e024934_P002 Zm00001e024934 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 60 118
No external refs found!