1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os06g39744.1

LOC_Os06g39744.1 (YCF4, LOC_Os06g39744)


Aliases : YCF4, LOC_Os06g39744

Description : YCF4 protein involved in PS-I assembly


Gene families : OG0009318 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0009318_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g39744.1
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AMTR_s02490p00007250 YCF4,... Photosystem I assembly protein Ycf4 OS=Amborella trichopoda 0.14 OrthoFinder output from all 47 species
ATCG00520 YCF4 unfolded protein binding 0.46 OrthoFinder output from all 47 species
Aev_g15963 YCF4 protein involved in PS-I assembly *(YCF4) & original... 0.42 OrthoFinder output from all 47 species
Aob_g29003 YCF4 protein involved in PS-I assembly *(YCF4) & original... 0.16 OrthoFinder output from all 47 species
Azfi_s0001.g000196 No alias not classified & original description: CDS=1-402 0.08 OrthoFinder output from all 47 species
Ceric.05G050000.1 YCF4, Ceric.05G050000 protein involved in PS-I assembly *(YCF4) & original... 0.29 OrthoFinder output from all 47 species
Ceric.16G060200.1 YCF4, Ceric.16G060200 protein involved in PS-I assembly *(YCF4) & original... 0.05 OrthoFinder output from all 47 species
Ceric.1Z018300.1 YCF4, Ceric.1Z018300 protein involved in PS-I assembly *(YCF4) & original... 0.03 OrthoFinder output from all 47 species
Ceric.29G033700.1 YCF4, Ceric.29G033700 protein involved in PS-I assembly *(YCF4) & original... 0.09 OrthoFinder output from all 47 species
Ceric.38G006800.1 YCF4, Ceric.38G006800 protein involved in PS-I assembly *(YCF4) & original... 0.29 OrthoFinder output from all 47 species
GSVIVT01030619001 YCF4 Photosystem I assembly protein Ycf4 OS=Vitis vinifera 0.11 OrthoFinder output from all 47 species
Gb_22391 YCF4 YCF4 protein involved in PS-I assembly 0.04 OrthoFinder output from all 47 species
LOC_Os01g58049.1 LOC_Os01g58049 YCF4 protein involved in PS-I assembly 0.08 OrthoFinder output from all 47 species
MA_36633g0010 No alias Photosystem I assembly protein Ycf4 OS=Pinus koraiensis... 0.02 OrthoFinder output from all 47 species
Mpzg00380.1 YCF4 YCF4 protein involved in PS-I assembly 0.02 OrthoFinder output from all 47 species
Solyc00g500019.1.1 YCF4, Solyc00g500019 Photosystem I assembly protein Ycf4 OS=Solanum tuberosum... 0.4 OrthoFinder output from all 47 species
Solyc00g500066.1.1 YCF4, Solyc00g500066 Photosystem I assembly protein Ycf4 OS=Solanum tuberosum... 0.22 OrthoFinder output from all 47 species
Solyc04g039810.1.1 YCF4, Solyc04g039810 Photosystem I assembly protein Ycf4 OS=Solanum tuberosum... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009522 photosystem I IEA Interproscan
CC GO:0009579 thylakoid IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0009772 photosynthetic electron transport in photosystem II IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
MF GO:0016168 chlorophyll binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP HCCA
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR003359 PSI_Ycf4_assembly 7 183
No external refs found!