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  5. LOC_Os06g40620.2

LOC_Os06g40620.2 (SNF7.2, VPS32, LOC_Os06g40620)


Aliases : SNF7.2, VPS32, LOC_Os06g40620

Description : component VPS32/SNF7 of ESCRT-III complex


Gene families : OG0001125 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001125_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g40620.2

Target Alias Description ECC score Gene Family Method Actions
Adi_g019238 SNF7.2, VPS32 component *(VPS32/SNF7) of ESCRT-III complex & original... 0.02 OrthoFinder output from all 47 species
Adi_g084700 SNF7.1 component *(VPS32/SNF7) of ESCRT-III complex & original... 0.02 OrthoFinder output from all 47 species
Aop_g02394 SNF7.2, VPS32 component *(VPS32/SNF7) of ESCRT-III complex & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0018.g014906 SNF7.2, VPS32 component *(VPS32/SNF7) of ESCRT-III complex & original... 0.02 OrthoFinder output from all 47 species
Cba_g76258 SNF7.2, VPS32 component *(VPS32/SNF7) of ESCRT-III complex & original... 0.02 OrthoFinder output from all 47 species
Ceric.18G015000.1 SNF7.2, VPS32,... component *(VPS32/SNF7) of ESCRT-III complex & original... 0.03 OrthoFinder output from all 47 species
Cre06.g282200 SNF7.2, VPS32 Vesicle trafficking.endomembrane trafficking.ESCRT... 0.02 OrthoFinder output from all 47 species
Len_g03128 SNF7.1 component *(VPS32/SNF7) of ESCRT-III complex & original... 0.04 OrthoFinder output from all 47 species
MA_10435786g0010 SNF7.2, VPS32 component VPS32/SNF7 of ESCRT-III complex 0.05 OrthoFinder output from all 47 species
Msp_g43811 SNF7.2, VPS32 component *(VPS32/SNF7) of ESCRT-III complex & original... 0.04 OrthoFinder output from all 47 species
Nbi_g03437 SNF7.2, VPS32 component *(VPS32/SNF7) of ESCRT-III complex & original... 0.04 OrthoFinder output from all 47 species
Ppi_g29889 SNF7.2, VPS32 component *(VPS32/SNF7) of ESCRT-III complex & original... 0.02 OrthoFinder output from all 47 species
Zm00001e037444_P001 SNF7.2, VPS32,... component VPS32/SNF7 of ESCRT-III complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0007034 vacuolar transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
InterPro domains Description Start Stop
IPR005024 Snf7_fam 23 190
No external refs found!