1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os06g43210.1

LOC_Os06g43210.1 (LOC_Os06g43210)


Aliases : LOC_Os06g43210

Description : ubiquitin ligase component Doa10 of ER-associated protein degradation (ERAD) machinery


Gene families : OG0001940 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001940_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g43210.1

Target Alias Description ECC score Gene Family Method Actions
AT4G34100 No alias RING/U-box superfamily protein 0.06 OrthoFinder output from all 47 species
Adi_g012557 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.02 OrthoFinder output from all 47 species
Adi_g073698 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g08671 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.02 OrthoFinder output from all 47 species
Als_g38475 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08474 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.03 OrthoFinder output from all 47 species
Cba_g05962 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.02 OrthoFinder output from all 47 species
Ceric.22G052000.1 Ceric.22G052000 E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.03 OrthoFinder output from all 47 species
Ehy_g09859 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.02 OrthoFinder output from all 47 species
Ehy_g15790 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.04 OrthoFinder output from all 47 species
GSVIVT01031710001 No alias Protein degradation.ER-associated protein degradation... 0.06 OrthoFinder output from all 47 species
Gb_33866 No alias ubiquitin ligase component Doa10 of ER-associated... 0.02 OrthoFinder output from all 47 species
Len_g21857 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.03 OrthoFinder output from all 47 species
MA_130450g0010 No alias ubiquitin ligase component Doa10 of ER-associated... 0.02 OrthoFinder output from all 47 species
Ore_g38212 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.02 OrthoFinder output from all 47 species
Pnu_g32909 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0071.g016789 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.03 OrthoFinder output from all 47 species
Sam_g13534 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.03 OrthoFinder output from all 47 species
Solyc01g107880.3.1 Solyc01g107880 ubiquitin ligase component Doa10 of ER-associated... 0.03 OrthoFinder output from all 47 species
Spa_g19268 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.02 OrthoFinder output from all 47 species
Spa_g26742 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.02 OrthoFinder output from all 47 species
Zm00001e030477_P001 Zm00001e030477 ubiquitin ligase component Doa10 of ER-associated... 0.08 OrthoFinder output from all 47 species
Zm00001e037502_P001 Zm00001e037502 ubiquitin ligase component Doa10 of ER-associated... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 39 85
No external refs found!