LOC_Os06g43900.1 (LOC_Os06g43900)

Aliases : LOC_Os06g43900

Description : component psRPL35 of large ribosomal subunit proteome

Gene families : OG0006536 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006536_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os06g43900.1
Cluster	HCCA: Cluster_59

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00019p00070230	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.05	OrthoFinder output from all 47 species
AT2G24090	No alias	Ribosomal protein L35	0.23	OrthoFinder output from all 47 species
Adi_g032989	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aev_g12788	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ala_g09316	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Als_g18654	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aob_g08024	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Aop_g18112	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Ceric.15G044500.1	Ceric.15G044500	component *(bL35c) of large plastid ribosomal-subunit...	0.15	OrthoFinder output from all 47 species
Cre04.g217932	No alias	Protein biosynthesis.organelle translation...	0.15	OrthoFinder output from all 47 species
Dac_g26648	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Dcu_g43056	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.16	OrthoFinder output from all 47 species
Dde_g06179	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ehy_g03085	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
GSVIVT01012561001	No alias	Protein biosynthesis.organelle translation...	0.01	OrthoFinder output from all 47 species
GSVIVT01012574001	No alias	Protein biosynthesis.organelle translation...	0.04	OrthoFinder output from all 47 species
Gb_16123	No alias	component psRPL35 of large ribosomal subunit proteome	0.1	OrthoFinder output from all 47 species
Len_g09835	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
MA_181338g0010	No alias	component psRPL35 of large ribosomal subunit proteome	0.07	OrthoFinder output from all 47 species
Mp5g05850.1	No alias	component psRPL35 of large ribosomal subunit proteome	0.23	OrthoFinder output from all 47 species
Msp_g20481	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Nbi_g30018	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ore_g08410	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Pir_g14080	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Pp3c21_8680V3.1	Pp3c21_8680	Ribosomal protein L35	0.01	OrthoFinder output from all 47 species
Pp3c22_13420V3.1	Pp3c22_13420	Ribosomal protein L35	0.09	OrthoFinder output from all 47 species
Ppi_g18684	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0053.g014110	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Sam_g19900	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Smo444022	No alias	Protein biosynthesis.organelle translation...	0.07	OrthoFinder output from all 47 species
Solyc07g006000.3.1	Solyc07g006000	component psRPL35 of large ribosomal subunit proteome	0.15	OrthoFinder output from all 47 species
Spa_g24771	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Zm00001e037448_P001	Zm00001e037448	component psRPL35 of large ribosomal subunit proteome	0.27	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	HCCA
MF	GO:0005381	iron ion transmembrane transporter activity	IEP	HCCA
BP	GO:0006826	iron ion transport	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0010207	photosystem II assembly	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0034755	iron ion transmembrane transport	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR021137	Ribosomal_L35	76	133

External Links

No external refs found!

LOC_Os06g43900.1 (LOC_Os06g43900)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation