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  5. LOC_Os06g46366.1

LOC_Os06g46366.1 (LOC_Os06g46366)


Aliases : LOC_Os06g46366

Description : RING-v-class E3 ligase


Gene families : OG0000484 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000484_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g46366.1
Cluster HCCA: Cluster_169

Target Alias Description ECC score Gene Family Method Actions
AT3G06330 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Als_g22879 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g33017 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g05736 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g75901 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g10607 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os06g23274.1 LOC_Os06g23274 RING-v-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_88112g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Pir_g25036 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g07939 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g11481 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g48929 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g011770.3.1 Solyc09g011770 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc11g069350.2.1 Solyc11g069350 RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species
Spa_g06347 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g25001 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g51653 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e014864_P002 Zm00001e014864 RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 241 288
No external refs found!