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  5. LOC_Os07g05720.1

LOC_Os07g05720.1 (TCP2, LOC_Os07g05720)


Aliases : TCP2, LOC_Os07g05720

Description : transcription factor (TCP)


Gene families : OG0000529 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000529_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g05720.1
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00158020 TCP4, MEE35,... RNA biosynthesis.transcriptional activation.TCP... 0.03 OrthoFinder output from all 47 species
AMTR_s00154p00072430 TCP13, TFPD,... RNA biosynthesis.transcriptional activation.TCP... 0.03 OrthoFinder output from all 47 species
AT1G68800 TCP12, BRC2 TCP domain protein 12 0.06 OrthoFinder output from all 47 species
AT3G18550 BRC1, ATTCP18, TCP18 TCP family transcription factor 0.03 OrthoFinder output from all 47 species
Adi_g000708 No alias TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g18903 TCP3 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30415 TCP2 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene02925.t1 TCP3, Aspi01Gene02925 TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene27741.t1 TCP2, Aspi01Gene27741 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0168.g054602 TCP3 TCP-type transcription factor & original description: CDS=18-1559 0.05 OrthoFinder output from all 47 species
Cba_g22010 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g28469 TCP3 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g04803 TCP3 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07031 TCP13, TFPD, PTF1 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01014236001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.03 OrthoFinder output from all 47 species
Gb_30049 TCP2 transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
LOC_Os01g11550.1 TCP4, MEE35,... transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
LOC_Os03g57190.1 ATTCP24, TCP24,... transcription factor (TCP) 0.05 OrthoFinder output from all 47 species
Lfl_g07001 TCP10 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g20112 TCP2 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10533 ATTCP24, TCP24 TCP-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g26630 TCP2 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02212 TCP3 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g045030.2.1 TCP12, BRC2,... transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Solyc05g012840.1.1 TCP4, MEE35,... transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Solyc06g069240.2.1 TCP12, BRC2,... transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Zm00001e009811_P001 BRC1, ATTCP18,... transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Zm00001e011516_P001 TCP2, Zm00001e011516 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
Zm00001e011911_P001 ATTCP24, TCP24,... transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
Zm00001e027401_P002 TCP5, Zm00001e027401 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Zm00001e032821_P001 TCP2, Zm00001e032821 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
Zm00001e034097_P001 BRC1, ATTCP18,... transcription factor (TCP) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR017887 TF_TCP_subgr 60 194
No external refs found!