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  5. LOC_Os07g09600.1

LOC_Os07g09600.1 (ATVAMP725, VAMP725,...)


Aliases : ATVAMP725, VAMP725, LOC_Os07g09600

Description : R-SNARE component VAMP721/VAMP722 of SNARE cell-plate vesicle fusion complex. VAMP7-type R-type SNARE longin protein


Gene families : OG0000720 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000720_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g09600.1
Cluster HCCA: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00095920 ATVAMP721,... Vesicle trafficking.SNARE target membrane recognition... 0.03 OrthoFinder output from all 47 species
AT1G04750 ATVAMP721,... vesicle-associated membrane protein 721 0.03 OrthoFinder output from all 47 species
AT3G54300 VAMP727, ATVAMP727 vesicle-associated membrane protein 727 0.02 OrthoFinder output from all 47 species
Adi_g012928 ATVAMP725, VAMP725 R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Adi_g013811 VAMP727, ATVAMP727 R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Aev_g08135 ATVAMP725, VAMP725 R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Als_g06684 ATVAMP721,... R-type VAMP7-group component of SNARE longin membrane... 0.03 OrthoFinder output from all 47 species
Als_g10078 ATVAMP725, VAMP725 R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Aob_g00946 VAMP727, ATVAMP727 R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Aop_g03399 ATVAMP721,... R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Aspi01Gene66794.t1 ATVAMP721,... R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Azfi_s0064.g035436 ATVAMP721,... non-SNARE-type phytolongin & original description: CDS=304-1083 0.03 OrthoFinder output from all 47 species
Cba_g69182 ATVAMP725, VAMP725 R-type VAMP7-group component of SNARE longin membrane... 0.04 OrthoFinder output from all 47 species
Cre04.g224750 ATVAMP725, VAMP725 Vesicle trafficking.SNARE target membrane recognition... 0.04 OrthoFinder output from all 47 species
Cre04.g225900 ATVAMP725, VAMP725 Vesicle trafficking.SNARE target membrane recognition... 0.03 OrthoFinder output from all 47 species
GSVIVT01010710001 VAMP727, ATVAMP727 Vesicle trafficking.SNARE target membrane recognition... 0.02 OrthoFinder output from all 47 species
Lfl_g22785 ATVAMP721,... R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
MA_92947g0030 VAMP726, ATVAMP726 VAMP7-type R-type SNARE longin protein 0.03 OrthoFinder output from all 47 species
Nbi_g05177 ATVAMP721,... R-type VAMP7-group component of SNARE longin membrane... 0.03 OrthoFinder output from all 47 species
Ore_g04687 VAMP727, ATVAMP727 R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Pir_g01212 ATVAMP721,... R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Ppi_g01731 ATVAMP721,... R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001719 ATVAMP725, VAMP725 R-type VAMP7-group component of SNARE longin membrane... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0147.g023181 VAMP727, ATVAMP727 R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Solyc06g083530.3.1 VAMP726,... R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.05 OrthoFinder output from all 47 species
Solyc11g006780.2.1 VAMP727,... VAMP7-type R-type SNARE longin protein 0.03 OrthoFinder output from all 47 species
Spa_g11103 ATVAMP725, VAMP725 R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Zm00001e011409_P003 ATVAMP725,... R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.04 OrthoFinder output from all 47 species
Zm00001e033056_P001 ATVAMP721,... R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR010908 Longin_dom 32 111
IPR001388 Synaptobrevin-like 129 215
No external refs found!