Aliases : TAF15, LOC_Os07g19560
Description : component TAF15 of TFIId basal transcription regulation complex
Gene families : OG0003584 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003584_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: LOC_Os07g19560.1 | |
| Cluster | HCCA: Cluster_58 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00029p00107550 | TAF15,... | RNA biosynthesis.RNA polymerase II-dependent... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.10G036100.1 | TAF15, Ceric.10G036100 | component *(TAF15) of TFIId basal transcription... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01010206001 | TAF15 | RNA biosynthesis.RNA polymerase II-dependent... | 0.04 | OrthoFinder output from all 47 species | |
| Mp8g16600.1 | TAF15 | component TAF15 of TFIId basal transcription regulation complex | 0.05 | OrthoFinder output from all 47 species | |
| Nbi_g11841 | TAF15 | component *(TAF15) of TFIId basal transcription... | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g08780 | TAF15 | component *(TAF15) of TFIId basal transcription... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e010307_P004 | TAF15, Zm00001e010307 | component TAF15 of TFIId basal transcription regulation complex | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e034916_P002 | TAF15, Zm00001e034916 | component TAF15 of TFIId basal transcription regulation complex | 0.07 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003729 | mRNA binding | IEP | HCCA |
| CC | GO:0005685 | U1 snRNP | IEP | HCCA |
| BP | GO:0006376 | mRNA splice site selection | IEP | HCCA |
| BP | GO:0016043 | cellular component organization | IEP | HCCA |
| BP | GO:0022607 | cellular component assembly | IEP | HCCA |
| BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | HCCA |
| CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | HCCA |
| BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
| BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
| BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | HCCA |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
| CC | GO:0097525 | spliceosomal snRNP complex | IEP | HCCA |
| CC | GO:0120114 | Sm-like protein family complex | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| No external refs found! |
