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  5. LOC_Os07g39820.1

LOC_Os07g39820.1 (SHR, SGR7, LOC_Os07g39820)


Aliases : SHR, SGR7, LOC_Os07g39820

Description : transcription factor (GRAS). SHR gravity signalling transcription factor


Gene families : OG0003562 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003562_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g39820.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00182770 SHR, SGR7,... External stimuli response.gravity.sensing and... 0.05 OrthoFinder output from all 47 species
AT4G37650 SHR, SGR7 GRAS family transcription factor 0.05 OrthoFinder output from all 47 species
Aev_g06030 SHR, SGR7 gravity signalling transcription factor *(SHR) &... 0.02 OrthoFinder output from all 47 species
Aob_g17904 SHR, SGR7 gravity signalling transcription factor *(SHR) &... 0.03 OrthoFinder output from all 47 species
Aop_g10242 SHR, SGR7 gravity signalling transcription factor *(SHR) &... 0.03 OrthoFinder output from all 47 species
Cba_g08221 SHR, SGR7 gravity signalling transcription factor *(SHR) &... 0.03 OrthoFinder output from all 47 species
Cba_g49610 SHR, SGR7 gravity signalling transcription factor *(SHR) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01000107001 SHR, SGR7 External stimuli response.gravity.sensing and... 0.05 OrthoFinder output from all 47 species
MA_99004g0010 SHR, SGR7 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Pir_g12887 SHR, SGR7 gravity signalling transcription factor *(SHR) &... 0.02 OrthoFinder output from all 47 species
Solyc02g092370.1.1 SHR, SGR7, Solyc02g092370 transcription factor (GRAS). SHR gravity signalling... 0.05 OrthoFinder output from all 47 species
Solyc08g014030.1.1 SHR, SGR7, Solyc08g014030 transcription factor (GRAS). SHR gravity signalling... 0.05 OrthoFinder output from all 47 species
Tin_g21974 SHR, SGR7 gravity signalling transcription factor *(SHR) &... 0.03 OrthoFinder output from all 47 species
Zm00001e002085_P001 SHR, SGR7, Zm00001e002085 transcription factor (GRAS). SHR gravity signalling... 0.15 OrthoFinder output from all 47 species
Zm00001e035411_P001 SHR, SGR7, Zm00001e035411 transcription factor (GRAS). SHR gravity signalling... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 193 601
No external refs found!