1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os07g41090.1

LOC_Os07g41090.1 (ATHDA5, HDA05, HDA5,...)


Aliases : ATHDA5, HDA05, HDA5, LOC_Os07g41090

Description : class-II histone deacetylase


Gene families : OG0001559 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001559_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g41090.1

Target Alias Description ECC score Gene Family Method Actions
Als_g01049 ATHDA15, HDA15 class-II histone deacetylase & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0250.g060221 ATHDA15, HDA15 class-II histone deacetylase & original description: CDS=93-1925 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000093.133 ATHDA5, HDA05, HDA5 Histone deacetylase 5 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dde_g24471 ATHDA15, HDA15 class-II histone deacetylase & original description: none 0.04 OrthoFinder output from all 47 species
MA_50170g0010 ATHDA15, HDA15 Histone deacetylase 15 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc03g115150.4.1 ATHDA5, HDA05,... class-II histone deacetylase 0.06 OrthoFinder output from all 47 species
Tin_g08286 ATHDA15, HDA15 class-II histone deacetylase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e032874_P003 ATHDA15, HDA15,... class-II histone deacetylase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 32 332
No external refs found!