1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os07g42395.1

LOC_Os07g42395.1 (NRPE9A, NRPB9A,...)


Aliases : NRPE9A, NRPB9A, NRPD9A, LOC_Os07g42395

Description : subunit 9 of RNA polymerase


Gene families : OG0003486 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003486_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g42395.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Ceric.30G048200.1 NRPE9A, NRPB9A,... component *(NRPE9) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01035016001 NRPE9A, NRPB9A, NRPD9A RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 OrthoFinder output from all 47 species
Len_g40576 No alias component *(NRPE9) of RNA polymerase V complex &... 0.02 OrthoFinder output from all 47 species
MA_10427302g0010 NRPE9A, NRPB9A, NRPD9A subunit 9 of RNA polymerase 0.03 OrthoFinder output from all 47 species
Zm00001e035550_P004 NRPE9A, NRPB9A,... subunit 9 of RNA polymerase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP HCCA
BP GO:0006743 ubiquinone metabolic process IEP HCCA
BP GO:0006744 ubiquinone biosynthetic process IEP HCCA
CC GO:0031248 protein acetyltransferase complex IEP HCCA
BP GO:0042180 cellular ketone metabolic process IEP HCCA
BP GO:0042181 ketone biosynthetic process IEP HCCA
CC GO:0043189 H4/H2A histone acetyltransferase complex IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901661 quinone metabolic process IEP HCCA
BP GO:1901663 quinone biosynthetic process IEP HCCA
CC GO:1902493 acetyltransferase complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1902562 H4 histone acetyltransferase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001529 DNA-dir_RNA_pol_M/15kDasu 6 42
IPR001222 Znf_TFIIS 76 115
No external refs found!