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  5. LOC_Os07g43180.1

LOC_Os07g43180.1 (ASK2, SKP1B, LOC_Os07g43180)


Aliases : ASK2, SKP1B, LOC_Os07g43180

Description : target protein binding component SKP1/ASK1 of SKP1-CUL1-FBX (SCF) E3 ligase complexes


Gene families : OG0000379 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000379_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g43180.1
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AT4G34210 ASK11, SK11 SKP1-like 11 0.04 OrthoFinder output from all 47 species
Aspi01Gene27782.t1 ASK1, ATSKP1,... ASK-type linker component of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Azfi_s0003.g007582 No alias not classified & original description: CDS=203-667 0.02 OrthoFinder output from all 47 species
Cba_g38923 No alias ASK-type linker component of SCF E3 ubiquitin ligase... 0.01 OrthoFinder output from all 47 species
Ceric.20G072200.1 ASK2, SKP1B,... ASK-type linker component of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Dac_g39230 ASK1, ATSKP1,... ASK-type linker component of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Dac_g41160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os07g05180.1 ASK2, SKP1B,... target protein binding component SKP1/ASK1 of... 0.03 OrthoFinder output from all 47 species
LOC_Os07g22680.1 ASK2, SKP1B,... target protein binding component SKP1/ASK1 of... 0.03 OrthoFinder output from all 47 species
LOC_Os07g43270.1 ASK1, ATSKP1,... target protein binding component SKP1/ASK1 of... 0.05 OrthoFinder output from all 47 species
LOC_Os08g28820.1 ASK1, ATSKP1,... target protein binding component SKP1/ASK1 of... 0.03 OrthoFinder output from all 47 species
LOC_Os09g10200.1 ASK1, ATSKP1,... target protein binding component SKP1/ASK1 of... 0.01 OrthoFinder output from all 47 species
Len_g26515 ASK1, ATSKP1,... ASK-type linker component of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Mp2g05290.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g29347 ASK2, SKP1B ASK-type linker component of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Pir_g47078 SK19, ASK19 ASK-type linker component of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Ppi_g09622 ASK2, SKP1B ASK-type linker component of SCF E3 ubiquitin ligase... 0.05 OrthoFinder output from all 47 species
Ppi_g40477 ASK1, ATSKP1,... ASK-type linker component of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR016073 Skp1_comp_POZ 50 112
IPR016072 Skp1_comp_dimer 151 197
No external refs found!